Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   HO400_RS11535 Genome accession   NZ_CP053597
Coordinates   2454919..2456346 (-) Length   475 a.a.
NCBI ID   WP_000980563.1    Uniprot ID   -
Organism   Escherichia coli strain T7Express_LysY     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2449919..2461346
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HO400_RS11505 (HO400_11510) yeeZ 2449974..2450798 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  HO400_RS11510 (HO400_11515) yeeY 2450844..2451773 (+) 930 WP_000803363.1 LysR substrate-binding domain-containing protein -
  HO400_RS11515 (HO400_11520) yoeI 2451988..2452050 (+) 63 WP_010723108.1 membrane protein YoeI -
  HO400_RS11520 (HO400_11525) plaP 2452040..2453398 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  HO400_RS11525 (HO400_11530) tsuA 2453577..2454635 (+) 1059 WP_000492348.1 thiosulfate utilization transporter TsuA/YeeE -
  HO400_RS11530 (HO400_11535) tsuB 2454649..2454876 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  HO400_RS11535 (HO400_11540) sbcB 2454919..2456346 (-) 1428 WP_000980563.1 exodeoxyribonuclease I Machinery gene
  HO400_RS11540 (HO400_11545) dacD 2456555..2457721 (+) 1167 WP_001320295.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  HO400_RS11545 (HO400_11550) sbmC 2457840..2458313 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  HO400_RS11550 (HO400_11555) yeeA 2458511..2459569 (+) 1059 WP_001200905.1 FUSC family protein -
  HO400_RS11555 (HO400_11560) tmaR 2459741..2460070 (+) 330 WP_000450409.1 DUF496 family protein -
  HO400_RS11560 (HO400_11565) - 2460171..2460353 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  HO400_RS11565 (HO400_11570) - 2460407..2460553 (+) 147 Protein_2265 transposase domain-containing protein -
  HO400_RS11570 (HO400_11575) - 2460842..2460922 (-) 81 Protein_2266 hypothetical protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54484.77 Da        Isoelectric Point: 5.6054

>NTDB_id=392249 HO400_RS11535 WP_000980563.1 2454919..2456346(-) (sbcB) [Escherichia coli strain T7Express_LysY]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAQEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=392249 HO400_RS11535 WP_000980563.1 2454919..2456346(-) (sbcB) [Escherichia coli strain T7Express_LysY]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGATGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGT
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTTGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGCAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581