Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   GA636_RS11090 Genome accession   NZ_CP045135
Coordinates   2313263..2313634 (-) Length   123 a.a.
NCBI ID   WP_228288776.1    Uniprot ID   -
Organism   Acinetobacter indicus strain XG01     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2308263..2318634
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GA636_RS11060 tadA 2308503..2309024 (-) 522 WP_104484289.1 tRNA adenosine(34) deaminase TadA -
  GA636_RS11065 - 2309028..2310152 (-) 1125 WP_005177517.1 enoyl-CoA hydratase/isomerase family protein -
  GA636_RS11070 ung 2310149..2310864 (-) 716 Protein_2158 uracil-DNA glycosylase -
  GA636_RS11075 - 2310906..2311502 (-) 597 WP_005177512.1 6-pyruvoyl trahydropterin synthase family protein -
  GA636_RS11080 gspK 2311651..2312598 (-) 948 WP_104487765.1 type II secretion system minor pseudopilin GspK -
  GA636_RS11085 xcpW 2312631..2313266 (-) 636 WP_104489735.1 type II secretion system minor pseudopilin GspJ Machinery gene
  GA636_RS11090 xcpV 2313263..2313634 (-) 372 WP_228288776.1 type II secretion system minor pseudopilin GspI Machinery gene
  GA636_RS11095 - 2313750..2314322 (-) 573 WP_075174514.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  GA636_RS11100 - 2314328..2314942 (-) 615 WP_075166784.1 TetR/AcrR family transcriptional regulator -
  GA636_RS11105 - 2315003..2315776 (-) 774 WP_005177502.1 TatD family hydrolase -
  GA636_RS11110 - 2315806..2316147 (-) 342 WP_005177501.1 PilZ domain-containing protein -
  GA636_RS11115 - 2316159..2317142 (-) 984 WP_045795758.1 DNA polymerase III subunit delta' -
  GA636_RS11120 kdsB 2317151..2317915 (-) 765 WP_075174513.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 123 a.a.        Molecular weight: 13562.51 Da        Isoelectric Point: 5.5255

>NTDB_id=392232 GA636_RS11090 WP_228288776.1 2313263..2313634(-) (xcpV) [Acinetobacter indicus strain XG01]
MAGFTLLEVMVALAIFATAAMALTQVAMQYTQSTSHAILRTKAQFVALNEQALMEIQQDWLTGTQSKQVTLQGESWQIDK
SAQPTISPNVQRVEVQVSLFNPDTGQVEAGITHLVFFNHRVAQ

Nucleotide


Download         Length: 372 bp        

>NTDB_id=392232 GA636_RS11090 WP_228288776.1 2313263..2313634(-) (xcpV) [Acinetobacter indicus strain XG01]
ATTGCTGGTTTTACCTTGCTGGAAGTAATGGTGGCACTGGCCATTTTCGCTACAGCCGCCATGGCACTGACCCAAGTGGC
CATGCAATATACCCAGTCGACCTCTCATGCCATTTTAAGAACCAAAGCACAGTTTGTGGCCTTAAATGAACAGGCTCTAA
TGGAAATCCAACAGGACTGGCTGACGGGTACGCAATCAAAACAGGTTACCCTGCAAGGTGAAAGCTGGCAAATTGATAAA
AGCGCACAGCCGACCATTAGCCCGAATGTGCAGCGGGTAGAAGTGCAGGTCAGCTTATTTAACCCCGATACCGGTCAGGT
TGAAGCCGGCATCACCCATTTGGTGTTTTTTAATCATCGGGTGGCGCAATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(40-98)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-23)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

78.151

96.748

0.756

Multiple sequence alignment