Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   GA636_RS01745 Genome accession   NZ_CP045135
Coordinates   359120..359446 (-) Length   108 a.a.
NCBI ID   WP_005181647.1    Uniprot ID   N9MCR8
Organism   Acinetobacter indicus strain XG01     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 354120..364446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GA636_RS01725 - 354316..355023 (-) 708 WP_075167805.1 FHA domain-containing protein -
  GA636_RS01730 gspD 355090..357339 (-) 2250 WP_104484369.1 type II secretion system secretin GspD -
  GA636_RS01735 - 357380..358216 (-) 837 WP_075167807.1 type II secretion system protein N -
  GA636_RS01740 gspN 358216..358956 (-) 741 WP_005181650.1 type II secretion system protein N -
  GA636_RS01745 hns 359120..359446 (-) 327 WP_005181647.1 H-NS family nucleoid-associated regulatory protein Regulator
  GA636_RS01750 - 359592..360020 (-) 429 WP_005181644.1 acyl-CoA thioesterase -
  GA636_RS01755 - 360031..361224 (-) 1194 WP_160232122.1 heme biosynthesis protein HemY -
  GA636_RS01760 - 361227..362072 (-) 846 WP_160232123.1 hypothetical protein -
  GA636_RS01765 - 362069..362848 (-) 780 WP_160232124.1 uroporphyrinogen-III synthase -
  GA636_RS01770 hemC 362850..363767 (-) 918 WP_104500067.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12240.97 Da        Isoelectric Point: 8.4694

>NTDB_id=392205 GA636_RS01745 WP_005181647.1 359120..359446(-) (hns) [Acinetobacter indicus strain XG01]
MMPDISNLSVEQLKRLQEEAEALIASKKDQAVEDAYNQILAIAENAGLSIEQILEFGASKRKKNVRKSVEPRYRNKANAN
ETWTGRGKQPRWLVAELEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=392205 GA636_RS01745 WP_005181647.1 359120..359446(-) (hns) [Acinetobacter indicus strain XG01]
ATGATGCCCGATATTAGTAATTTGTCTGTAGAACAATTAAAGCGCTTGCAGGAAGAAGCGGAAGCATTAATTGCATCGAA
AAAGGACCAGGCAGTTGAAGATGCATATAATCAGATTTTGGCAATTGCTGAAAATGCGGGTTTAAGCATTGAACAGATTC
TTGAGTTTGGTGCGTCTAAACGTAAAAAGAATGTACGTAAATCGGTAGAGCCGCGTTATCGTAATAAAGCCAATGCCAAT
GAAACCTGGACAGGTCGTGGTAAGCAACCGCGCTGGTTAGTGGCAGAACTGGAAAAAGGTGCCAAGCTTGAAGACTTCTT
GATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9MCR8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

85.185

100

0.852

Multiple sequence alignment