Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   GA636_RS01260 Genome accession   NZ_CP045135
Coordinates   250655..252877 (+) Length   740 a.a.
NCBI ID   WP_160232115.1    Uniprot ID   -
Organism   Acinetobacter indicus strain XG01     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 245655..257877
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GA636_RS01235 - 245657..246496 (+) 840 WP_005181878.1 HlyC/CorC family transporter -
  GA636_RS01240 lnt 246493..248052 (+) 1560 WP_104490232.1 apolipoprotein N-acyltransferase -
  GA636_RS01245 - 248195..248530 (-) 336 WP_160232114.1 hypothetical protein -
  GA636_RS01250 gspG 248809..249246 (-) 438 WP_005181871.1 type II secretion system major pseudopilin GspG -
  GA636_RS01255 gspF 249298..250503 (-) 1206 WP_045795388.1 type II secretion system inner membrane protein GspF -
  GA636_RS01260 priA 250655..252877 (+) 2223 WP_160232115.1 primosomal protein N' Machinery gene
  GA636_RS01265 - 252928..254769 (+) 1842 WP_104473748.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  GA636_RS01270 - 254820..255695 (+) 876 WP_075175495.1 Hsp33 family molecular chaperone HslO -
  GA636_RS01275 - 256107..256568 (+) 462 WP_005181860.1 DUF2147 domain-containing protein -
  GA636_RS01280 - 256961..257299 (+) 339 WP_005181858.1 chaperone modulator CbpM -
  GA636_RS01285 - 257376..257645 (+) 270 WP_034598128.1 YdcH family protein -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 84213.31 Da        Isoelectric Point: 8.7892

>NTDB_id=392201 GA636_RS01260 WP_160232115.1 250655..252877(+) (priA) [Acinetobacter indicus strain XG01]
MPNSPVHPTPIYRVRVAVPVYLYDGFDYMLSAAEYQQAAVGARVLVSFGRQNLVGIIIEKLPPEHPLDPKIKLKAISELL
DQQPILDQKVLTLLTWSAQYYQFPIGEVMHSALPSLLRQGRPYNLLARMWKLLDDQAEAKLKRSEKQQEAYKVLKLHPSG
TSENILNLAGIETATLKALEKKQICYCDLEQQDFSPVPMTLAQMPLTPNSDQKQAIETVLKAQHRYQAFLLDGLTGSGKT
EVYLQIMQEVLKQGKQVLVLVPEIGLTPQTISRFQSRFHCHIALLHSGLNDSKRLQAWQAAQTGKASIILGTRSAIYTPL
PNLGLIILDEEHDLSFKQQEGFRYHARDVALYRAHLENCPVILGSATPSIDSYALTEQGKMTRLELNQRAGPALMPKIHI
IDLKVAQKQLGLSLLLIQEIKKRLQKKEQVLIFLNRRGYAPVLVCDSCGWQAQCPHCDANFTLHHSPYTHLHCHHCGTIH
RKPEQCPQCQHSELKTLGMGTAKVEENLQQLFPDYEVVRVDRDSTSRVGSWQKIYDRIQTSQPLILLGTQMLAKGHHFPY
VTLVAILDIDAGLLSVDIRAPERTAQLIVQVAGRAGRGEHKGDVYLQTLRPDHPLLSTLVEQDYRTFARQTLKERQAALL
PPFRYTALIRCESKSQEQNQQFLQQHAQWLRENSEQLIDIWGPIPAPMERKAGRYQAHLVLLSQDRARLHFYLRAWWQNM
LHHKPSNMKLSLDIDPQEFS

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=392201 GA636_RS01260 WP_160232115.1 250655..252877(+) (priA) [Acinetobacter indicus strain XG01]
ATGCCAAATTCGCCCGTTCATCCCACCCCCATCTACCGTGTTCGTGTAGCTGTTCCGGTCTATCTGTATGACGGGTTTGA
CTATATGCTCAGTGCGGCCGAATATCAGCAGGCTGCCGTCGGCGCGCGGGTACTGGTGTCCTTTGGCCGGCAGAATCTGG
TAGGCATCATTATTGAAAAACTCCCGCCCGAGCATCCACTTGACCCCAAGATTAAACTGAAAGCCATTAGCGAGCTGCTC
GACCAGCAACCGATTCTAGATCAGAAAGTTTTAACTTTGTTGACATGGTCGGCGCAGTATTATCAGTTTCCGATTGGCGA
AGTGATGCATAGCGCCCTGCCCAGCCTGTTACGTCAGGGACGCCCCTATAATTTACTGGCACGAATGTGGAAACTACTGG
ATGATCAGGCCGAAGCCAAACTGAAGCGCTCCGAGAAGCAGCAGGAGGCTTATAAAGTCCTGAAGCTGCATCCGAGCGGG
ACCTCAGAAAATATCCTGAATCTGGCCGGTATTGAAACTGCAACCTTAAAAGCGCTGGAAAAAAAGCAGATTTGCTACTG
CGATCTGGAGCAGCAGGATTTTAGCCCAGTGCCAATGACGCTGGCACAAATGCCGTTAACCCCGAACAGCGACCAGAAAC
AGGCCATTGAAACCGTACTGAAAGCACAGCATCGTTATCAGGCCTTTTTACTCGATGGTCTGACCGGCAGTGGTAAAACC
GAAGTCTATCTGCAAATCATGCAGGAAGTGCTAAAACAGGGTAAACAGGTATTGGTGCTGGTGCCGGAAATTGGCCTGAC
TCCTCAAACCATTAGCCGCTTCCAGTCACGTTTTCACTGTCATATTGCGCTGCTGCATTCCGGTTTAAATGACAGCAAAC
GTCTGCAGGCCTGGCAGGCCGCCCAGACCGGCAAAGCCTCCATTATTCTTGGTACGCGCTCGGCAATTTATACCCCGCTG
CCCAATTTGGGGCTGATTATTCTGGATGAAGAACACGACCTGTCATTTAAACAGCAGGAAGGCTTTCGTTACCATGCCCG
TGATGTGGCCTTATACCGTGCCCATTTAGAAAACTGCCCGGTGATTCTCGGTTCAGCAACGCCCAGCATTGACAGCTATG
CCTTGACCGAACAGGGTAAAATGACCCGTCTGGAACTGAACCAGCGCGCTGGCCCGGCACTCATGCCCAAAATTCACATC
ATTGACTTAAAAGTTGCGCAAAAACAGCTAGGTCTAAGCCTGCTGCTGATTCAGGAAATCAAGAAACGCCTGCAGAAAAA
AGAACAGGTGCTAATTTTCTTAAACCGCCGTGGTTATGCACCGGTGCTGGTCTGTGACAGCTGCGGCTGGCAGGCACAAT
GCCCGCATTGTGATGCCAACTTTACCCTGCATCATAGTCCATATACCCATCTGCATTGCCATCATTGTGGCACCATTCAC
CGCAAGCCGGAGCAATGCCCGCAGTGCCAGCATAGCGAACTGAAAACCCTGGGCATGGGCACGGCCAAGGTTGAAGAAAA
CCTGCAACAGCTGTTCCCGGACTATGAGGTGGTGCGGGTAGACCGCGATTCCACCAGCCGCGTCGGCAGCTGGCAAAAAA
TTTATGACCGCATTCAAACCAGCCAGCCACTGATTCTGCTTGGCACCCAAATGCTGGCCAAAGGGCATCATTTTCCTTAT
GTCACCTTAGTAGCGATTTTAGATATTGATGCCGGCCTGTTAAGTGTTGATATCCGGGCGCCAGAGCGGACTGCGCAGCT
GATTGTGCAGGTGGCCGGTCGTGCCGGTCGCGGTGAGCATAAAGGCGATGTCTATTTACAGACCCTGCGTCCTGATCATC
CGCTGCTGAGCACGCTGGTCGAGCAGGATTATCGTACCTTTGCCCGGCAAACCTTAAAAGAACGTCAGGCTGCCCTGCTG
CCCCCGTTTCGCTATACTGCCCTGATTCGCTGTGAATCGAAAAGTCAGGAGCAGAACCAGCAGTTTTTACAGCAACATGC
CCAGTGGCTGCGAGAAAATTCTGAACAGTTAATTGATATCTGGGGACCGATTCCAGCGCCAATGGAACGCAAGGCCGGCC
GCTATCAGGCGCATCTGGTGCTGTTGTCGCAAGATCGTGCCCGTTTACATTTTTATCTACGTGCATGGTGGCAAAATATG
TTGCATCACAAGCCATCAAATATGAAACTTAGCTTAGATATAGACCCTCAGGAATTCAGTTAA

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(642-736)

Type III restriction enzyme, res subunit (ResIII)

(207-369)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

73.45

100

0.736

Multiple sequence alignment