Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   GA721_RS12955 Genome accession   NZ_CP045131
Coordinates   2735119..2735445 (-) Length   108 a.a.
NCBI ID   WP_005181647.1    Uniprot ID   N9MCR8
Organism   Acinetobacter indicus strain TQ18     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2730119..2740445
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GA721_RS12935 - 2730315..2731022 (-) 708 WP_160243604.1 FHA domain-containing protein -
  GA721_RS12940 gspD 2731089..2733338 (-) 2250 WP_104489106.1 type II secretion system secretin GspD -
  GA721_RS12945 - 2733379..2734215 (-) 837 WP_104489107.1 type II secretion system protein N -
  GA721_RS12950 gspN 2734215..2734955 (-) 741 WP_104473370.1 type II secretion system protein N -
  GA721_RS12955 hns 2735119..2735445 (-) 327 WP_005181647.1 H-NS family nucleoid-associated regulatory protein Regulator
  GA721_RS12960 - 2735591..2736019 (-) 429 WP_005181644.1 acyl-CoA thioesterase -
  GA721_RS12965 - 2736030..2737223 (-) 1194 WP_160243605.1 heme biosynthesis protein HemY -
  GA721_RS12970 - 2737226..2738071 (-) 846 WP_005181639.1 hypothetical protein -
  GA721_RS12975 - 2738068..2738847 (-) 780 WP_127799614.1 uroporphyrinogen-III synthase -
  GA721_RS12980 hemC 2738849..2739766 (-) 918 WP_160243710.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12240.97 Da        Isoelectric Point: 8.4694

>NTDB_id=392188 GA721_RS12955 WP_005181647.1 2735119..2735445(-) (hns) [Acinetobacter indicus strain TQ18]
MMPDISNLSVEQLKRLQEEAEALIASKKDQAVEDAYNQILAIAENAGLSIEQILEFGASKRKKNVRKSVEPRYRNKANAN
ETWTGRGKQPRWLVAELEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=392188 GA721_RS12955 WP_005181647.1 2735119..2735445(-) (hns) [Acinetobacter indicus strain TQ18]
ATGATGCCCGATATTAGTAATTTGTCTGTAGAACAATTAAAGCGCTTGCAGGAAGAAGCGGAAGCATTAATTGCATCGAA
AAAGGACCAGGCAGTTGAAGATGCATATAATCAGATTTTGGCAATTGCTGAAAATGCGGGTTTAAGCATTGAACAGATTC
TTGAGTTTGGTGCGTCTAAACGTAAAAAGAATGTACGTAAATCGGTAGAGCCGCGTTATCGTAATAAAGCCAATGCCAAT
GAAACCTGGACAGGTCGTGGTAAGCAACCGCGCTGGTTAGTGGCAGAACTGGAAAAAGGTGCCAAGCTTGAAGACTTCTT
GATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9MCR8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

85.185

100

0.852

Multiple sequence alignment