Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   GA660_RS13505 Genome accession   NZ_CP045129
Coordinates   2841674..2842831 (+) Length   385 a.a.
NCBI ID   WP_160241722.1    Uniprot ID   -
Organism   Acinetobacter indicus strain TQ04     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2836674..2847831
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GA660_RS13490 - 2838389..2840443 (-) 2055 WP_160241721.1 TonB-dependent copper receptor -
  GA660_RS13495 - 2840517..2840939 (-) 423 WP_016658991.1 DUF2946 family protein -
  GA660_RS13500 def 2841030..2841554 (-) 525 WP_005181462.1 peptide deformylase -
  GA660_RS13505 tsaP 2841674..2842831 (+) 1158 WP_160241722.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  GA660_RS13510 dprA 2842848..2843990 (+) 1143 WP_075168149.1 DNA-processing protein DprA Machinery gene
  GA660_RS13515 - 2844035..2844601 (+) 567 WP_005181449.1 L-threonylcarbamoyladenylate synthase -
  GA660_RS13520 - 2844982..2845893 (-) 912 WP_005181447.1 DMT family transporter -
  GA660_RS13525 - 2846222..2846764 (+) 543 WP_005181445.1 glutathione peroxidase -
  GA660_RS13530 - 2846947..2847555 (+) 609 WP_160241814.1 hypothetical protein -

Sequence

Protein


Download         Length: 385 a.a.        Molecular weight: 42520.60 Da        Isoelectric Point: 9.2404

>NTDB_id=392152 GA660_RS13505 WP_160241722.1 2841674..2842831(+) (tsaP) [Acinetobacter indicus strain TQ04]
MKKVLKGTSSFRALGLKQQALALAVCFSFGVGAVSTVQAAPARNINPPTLQANAPNVYVVKKGDTLWDISKKFLQNPLRW
REIWASNKHVKNPHWIFPGDRLLMCTYDGRPIIGKDEGDGCEGIIRRYTGNTTSLQPQIRVESLNNTIPVIPLEYIQHWL
ERTSIIAPESLQQTPYILGTADQRVLAAKGQNVYARGQGLQVGQRYAVYREGEPYIFTDANGKKYNAGLELTQVASGIAV
RGENDITTLKLTDTYNAEVRRGDRVLPEYDPMLPTLFYPTNAEHIAADGQVVRVMGSIGTAAKHSVVTIDRGQAHGVQSG
HVFAVTQKGEVVTDPKTRERVQLPGERIGYAMVFKTFDQLSYAYILDSELPIKVGAGIQPPIMED

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=392152 GA660_RS13505 WP_160241722.1 2841674..2842831(+) (tsaP) [Acinetobacter indicus strain TQ04]
ATGAAAAAGGTTTTGAAGGGCACATCTTCTTTTCGTGCCTTGGGGTTAAAACAGCAGGCGCTGGCACTTGCTGTCTGTTT
CAGTTTTGGGGTGGGCGCAGTCAGTACTGTACAGGCCGCACCGGCACGCAATATCAACCCACCGACCTTACAGGCCAATG
CACCAAATGTGTATGTGGTGAAAAAAGGCGATACGCTGTGGGATATTTCCAAGAAGTTTCTGCAAAACCCGCTGCGCTGG
CGTGAAATCTGGGCCAGCAACAAGCACGTGAAAAATCCGCACTGGATTTTCCCGGGAGATCGACTGCTGATGTGTACCTA
TGATGGCCGCCCGATCATTGGTAAAGATGAAGGTGATGGCTGTGAAGGTATTATCCGTCGTTATACCGGTAACACCACCA
GCCTGCAGCCGCAAATCCGGGTCGAGTCACTCAACAATACCATTCCGGTAATTCCGTTAGAGTACATCCAGCACTGGCTG
GAACGTACCAGCATTATTGCCCCTGAATCTTTGCAACAGACGCCTTATATTTTAGGCACGGCGGATCAGCGTGTCCTGGC
GGCCAAAGGCCAGAATGTCTATGCCCGCGGTCAGGGTCTGCAAGTTGGCCAGCGTTATGCTGTGTATCGTGAAGGCGAAC
CGTATATCTTCACCGATGCCAACGGTAAAAAATACAATGCCGGTCTGGAGCTGACTCAGGTGGCATCCGGTATTGCAGTA
CGCGGTGAAAATGATATTACCACCCTGAAACTGACCGATACCTACAATGCCGAAGTGCGTCGTGGCGATCGTGTGCTGCC
AGAATATGACCCGATGTTACCAACCCTATTCTACCCGACCAATGCCGAACACATTGCAGCAGATGGCCAAGTGGTACGCG
TGATGGGTTCAATTGGTACCGCAGCTAAACACAGTGTGGTCACCATTGACCGTGGTCAGGCGCACGGCGTGCAATCCGGT
CATGTATTTGCTGTAACTCAAAAAGGCGAAGTGGTCACCGATCCGAAAACCCGTGAACGGGTGCAGCTGCCAGGCGAGCG
TATTGGCTATGCCATGGTCTTTAAAACCTTTGACCAGCTCAGCTATGCCTATATTCTGGACAGCGAACTACCAATTAAAG
TCGGGGCCGGTATTCAGCCACCGATTATGGAAGATTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

65.974

100

0.66

Multiple sequence alignment