Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   GA660_RS13105 Genome accession   NZ_CP045129
Coordinates   2753917..2754243 (-) Length   108 a.a.
NCBI ID   WP_075167809.1    Uniprot ID   A0A7S7AEC3
Organism   Acinetobacter indicus strain TQ04     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2748917..2759243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GA660_RS13085 - 2749113..2749820 (-) 708 WP_160241690.1 FHA domain-containing protein -
  GA660_RS13090 gspD 2749887..2752136 (-) 2250 WP_160241691.1 type II secretion system secretin GspD -
  GA660_RS13095 - 2752177..2753013 (-) 837 WP_160241692.1 type II secretion system protein N -
  GA660_RS13100 gspN 2753013..2753753 (-) 741 WP_104473370.1 type II secretion system protein N -
  GA660_RS13105 hns 2753917..2754243 (-) 327 WP_075167809.1 H-NS family nucleoid-associated regulatory protein Regulator
  GA660_RS13110 - 2754389..2754817 (-) 429 WP_005181644.1 acyl-CoA thioesterase -
  GA660_RS13115 - 2754828..2756021 (-) 1194 WP_127799618.1 heme biosynthesis protein HemY -
  GA660_RS13120 - 2756024..2756869 (-) 846 WP_160241693.1 hypothetical protein -
  GA660_RS13125 - 2756866..2757645 (-) 780 WP_160241694.1 uroporphyrinogen-III synthase -
  GA660_RS13130 hemC 2757647..2758564 (-) 918 WP_034598116.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12271.00 Da        Isoelectric Point: 8.4694

>NTDB_id=392147 GA660_RS13105 WP_075167809.1 2753917..2754243(-) (hns) [Acinetobacter indicus strain TQ04]
MMPDISNLSVEQLKRLQEEAEALIASKKDQAVEDAYNQILAIAENAGLSIEQILEFGASKRKKNVRKSVEPRYRNKTNAN
ETWTGRGKQPRWLVAELEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=392147 GA660_RS13105 WP_075167809.1 2753917..2754243(-) (hns) [Acinetobacter indicus strain TQ04]
ATGATGCCCGATATTAGTAATTTGTCTGTAGAACAATTAAAGCGCTTGCAGGAAGAAGCGGAAGCATTAATTGCATCAAA
AAAGGACCAGGCAGTTGAAGATGCATATAATCAGATTTTGGCAATTGCTGAAAATGCGGGTTTAAGCATTGAACAGATTC
TTGAGTTTGGTGCGTCTAAACGTAAAAAGAATGTACGTAAATCGGTAGAGCCGCGTTATCGTAATAAAACCAATGCCAAT
GAAACCTGGACAGGTCGTGGTAAGCAACCGCGCTGGTTAGTGGCAGAACTGGAAAAAGGTGCCAAGCTTGAAGACTTCTT
GATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7S7AEC3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

85.185

100

0.852

Multiple sequence alignment