Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   GA660_RS12630 Genome accession   NZ_CP045129
Coordinates   2644530..2646752 (+) Length   740 a.a.
NCBI ID   WP_160241665.1    Uniprot ID   -
Organism   Acinetobacter indicus strain TQ04     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2639530..2651752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GA660_RS12605 lnt 2639595..2641154 (+) 1560 WP_160241662.1 apolipoprotein N-acyltransferase -
  GA660_RS12610 - 2641308..2641643 (-) 336 WP_016659636.1 hypothetical protein -
  GA660_RS14745 gspG 2641923..2642306 (-) 384 WP_228718909.1 type II secretion system major pseudopilin GspG -
  GA660_RS14870 - 2642424..2642645 (-) 222 Protein_2457 hypothetical protein -
  GA660_RS12620 gspG 2642659..2643093 (-) 435 WP_160241664.1 type II secretion system major pseudopilin GspG -
  GA660_RS12625 gspF 2643173..2644378 (-) 1206 WP_005181870.1 type II secretion system inner membrane protein GspF -
  GA660_RS12630 priA 2644530..2646752 (+) 2223 WP_160241665.1 primosomal protein N' Machinery gene
  GA660_RS12635 - 2646802..2648643 (+) 1842 WP_016659637.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  GA660_RS12640 - 2648694..2649569 (+) 876 WP_075175495.1 Hsp33 family molecular chaperone HslO -
  GA660_RS12645 - 2649981..2650442 (+) 462 WP_005181860.1 DUF2147 domain-containing protein -
  GA660_RS12650 - 2650835..2651173 (+) 339 WP_005181858.1 chaperone modulator CbpM -
  GA660_RS12655 - 2651250..2651519 (+) 270 WP_034598128.1 YdcH family protein -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 84149.36 Da        Isoelectric Point: 9.0581

>NTDB_id=392143 GA660_RS12630 WP_160241665.1 2644530..2646752(+) (priA) [Acinetobacter indicus strain TQ04]
MPNSPVHPAPIYRVRVAVPVYLYDGFDYMLSAAEYQQAAVGARVLVSFGRQNLVGIIIEKLPPNHPLDPKIKLKAISELL
DQQPILDQKVLTLLTWSAQYYQFPIGEVMHSALPSLLRQGRPYNLLARMWKLLDDQAEAKLKRSEKQQEAYKVLKLHPSG
TSENILNLAGIETATLKALEKKQICYCDLEQQDFSPVPMTLAQMPLTPNSDQKQAIETVLKAQHRYQAFLLDGLTGSGKT
EVYLQIMQKVLKQGKQVLVLVPEIGLTPQTISRFQSRFHCHIALLHSGLNDSKRLQAWQAAQTGKASIILGTRSAIYTPL
PNLGLIILDEEHDLSFKQQEGFRYHARDVALYRAHLENCPVILGSATPSIDSYALTEQGKMIRLELNQRAGPALMPKIHI
IDLKVAQKQLGLSLLLIQEIKKRLQKKEQVLIFLNRRGYAPVLVCDSCGWQAQCPHCDANFTLHHSPYTHLHCHHCGTIH
RKPEQCPQCQHSELKTLGMGTAKVEENLQQLFPDYEVVRVDRDSTSRVGSWQKIYDRIQTSQPLILLGTQMLAKGHHFPY
VTLVAILDIDAGLLSVDIRAPERTAQLIVQVAGRAGRGEHKGDVYLQTLRPDHPLLSTLVEQDYRAFARQTLKERQAALL
PPFRYTALIRCESKSQEQNQQFLQQHAQWLRENSEQLIDIWGPIPAPMERKAGRYQAHLVLLSQDRARLHFYLRAWWQNM
LHHKPSNMKLSLDIDPQEFS

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=392143 GA660_RS12630 WP_160241665.1 2644530..2646752(+) (priA) [Acinetobacter indicus strain TQ04]
ATGCCAAATTCGCCCGTTCATCCCGCCCCCATCTACCGTGTTCGTGTAGCTGTTCCGGTCTATCTGTATGACGGGTTTGA
CTATATGCTCAGTGCGGCTGAATATCAGCAGGCTGCCGTTGGCGCGCGGGTGCTGGTGTCCTTTGGCCGGCAGAATCTGG
TGGGCATCATTATTGAAAAACTCCCGCCCAATCATCCGCTTGACCCCAAGATTAAACTGAAAGCCATTAGCGAGCTGCTC
GACCAGCAGCCGATTCTAGATCAGAAAGTTTTAACTTTGTTGACATGGTCGGCGCAGTATTATCAGTTTCCGATTGGCGA
AGTGATGCATAGCGCCCTGCCCAGCCTGTTACGTCAGGGACGCCCGTATAATTTACTGGCACGAATGTGGAAACTACTGG
ATGATCAGGCCGAAGCCAAACTGAAGCGCTCCGAGAAGCAGCAGGAGGCTTATAAAGTCCTGAAGCTGCATCCGAGCGGG
ACCTCAGAAAATATCCTGAATCTGGCCGGTATTGAAACTGCAACCTTAAAAGCGCTGGAAAAAAAGCAGATTTGCTACTG
CGATCTGGAACAGCAGGATTTTAGCCCAGTGCCAATGACGCTGGCGCAAATGCCGTTAACCCCGAACAGCGACCAGAAAC
AGGCCATTGAAACCGTACTGAAAGCACAGCATCGTTATCAGGCCTTTTTACTCGATGGTCTGACCGGCAGTGGTAAAACC
GAAGTCTATCTGCAAATCATGCAGAAAGTGCTAAAACAGGGTAAACAGGTATTGGTGCTGGTGCCGGAAATTGGCCTGAC
TCCTCAAACCATTAGCCGCTTCCAGTCACGTTTTCACTGTCATATTGCGCTGCTGCATTCCGGTTTAAATGACAGCAAAC
GTCTGCAGGCCTGGCAGGCCGCCCAGACCGGCAAAGCCTCCATTATTCTTGGTACGCGCTCGGCAATTTATACCCCGCTG
CCCAATTTGGGGCTGATTATTCTGGATGAAGAACACGACCTGTCATTTAAACAGCAGGAAGGCTTTCGTTACCATGCCCG
TGATGTGGCCTTATACCGTGCCCATTTAGAAAACTGCCCGGTGATTCTCGGTTCAGCTACGCCCAGCATTGACAGCTATG
CCTTAACGGAACAGGGTAAAATGATCCGTCTGGAACTGAACCAGCGTGCCGGCCCGGCACTGATGCCCAAAATTCACATC
ATTGACTTAAAAGTTGCGCAAAAACAGCTAGGTCTAAGCCTGCTGCTGATTCAGGAAATCAAGAAACGCCTGCAGAAAAA
AGAACAGGTGCTAATTTTCTTAAACCGCCGCGGTTATGCGCCAGTGCTGGTCTGTGACAGCTGTGGCTGGCAGGCACAAT
GCCCACACTGTGATGCCAACTTTACCCTGCATCATAGTCCATATACCCATCTGCATTGTCATCATTGTGGCACCATTCAC
CGCAAGCCGGAGCAATGTCCGCAGTGCCAGCATAGCGAACTGAAAACCCTGGGTATGGGCACAGCCAAGGTTGAAGAAAA
CCTACAACAGCTGTTCCCGGACTATGAGGTGGTGCGGGTAGACCGCGATTCCACCAGCCGCGTCGGCAGCTGGCAAAAAA
TTTATGACCGCATTCAAACCAGCCAGCCGCTGATTCTACTCGGCACCCAAATGCTGGCCAAGGGTCATCATTTTCCTTAT
GTCACCTTAGTAGCGATTTTAGATATTGATGCTGGCCTGTTAAGTGTTGATATCCGGGCACCGGAACGGACTGCGCAGCT
GATTGTGCAGGTGGCCGGTCGTGCCGGTCGCGGTGAGCATAAAGGCGATGTCTATTTACAGACCCTGCGTCCTGATCATC
CGCTGCTGAGCACGCTGGTCGAGCAGGATTATCGTGCCTTTGCCCGGCAAACCTTAAAAGAACGTCAGGCTGCCCTGCTG
CCCCCATTTCGCTATACCGCCCTGATTCGCTGCGAATCTAAAAGTCAGGAGCAGAATCAGCAGTTTTTACAGCAACATGC
TCAATGGCTGCGAGAAAATTCTGAACAGTTAATTGATATCTGGGGACCGATTCCGGCACCAATGGAACGCAAGGCCGGCC
GCTATCAGGCCCATTTAGTATTGTTGTCGCAAGATCGTGCCCGTTTACATTTTTATCTACGTGCATGGTGGCAAAATATG
TTGCATCACAAGCCATCAAATATGAAACTTAGCTTAGATATAGACCCTCAGGAATTCAGTTAA

Domains

Predicted by InterproScan.

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)

Type III restriction enzyme, res subunit (ResIII)

(207-369)

Primosomal protein N C-terminal domain (PriA_C)

(642-736)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

73.315

100

0.735

Multiple sequence alignment