Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   GA660_RS12025 Genome accession   NZ_CP045129
Coordinates   2524330..2525208 (-) Length   292 a.a.
NCBI ID   WP_005182159.1    Uniprot ID   N9KSY6
Organism   Acinetobacter indicus strain TQ04     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2519330..2530208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GA660_RS12005 miaB 2520881..2522335 (+) 1455 WP_104472822.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  GA660_RS12010 - 2522377..2523450 (+) 1074 WP_016659561.1 PhoH family protein -
  GA660_RS12015 ybeY 2523470..2523952 (+) 483 WP_005182166.1 rRNA maturation RNase YbeY -
  GA660_RS12020 - 2524043..2524333 (+) 291 WP_016659563.1 antibiotic biosynthesis monooxygenase family protein -
  GA660_RS12025 tonB2 2524330..2525208 (-) 879 WP_005182159.1 energy transducer TonB Machinery gene
  GA660_RS12030 - 2525448..2526131 (+) 684 WP_160241631.1 hypothetical protein -
  GA660_RS12035 - 2526285..2526998 (+) 714 WP_005182145.1 DUF3108 domain-containing protein -
  GA660_RS12040 - 2527088..2527663 (+) 576 WP_005182137.1 xanthine phosphoribosyltransferase -
  GA660_RS12045 - 2527880..2528260 (+) 381 WP_160241632.1 hypothetical protein -
  GA660_RS12050 - 2528318..2528500 (-) 183 WP_045796412.1 hypothetical protein -
  GA660_RS12055 wrbA 2528798..2529394 (-) 597 WP_104470746.1 NAD(P)H:quinone oxidoreductase -

Sequence

Protein


Download         Length: 292 a.a.        Molecular weight: 33024.72 Da        Isoelectric Point: 9.1867

>NTDB_id=392142 GA660_RS12025 WP_005182159.1 2524330..2525208(-) (tonB2) [Acinetobacter indicus strain TQ04]
MLKKFHFAPLTQQWWKDPLFGTVLTLAALSHLAVLTVQFVMPQQSDAAVKEIAVSLRPSATEIKDADFLAQADQQGSGTF
REAHRMSSDMPAPMIEQSAGDQQLESLERLQQQRELSFEEKVLMTTLSWQKQAAENQRKKALEELNSQFQAKAAMVASLE
AQYLQRQQNFSRQQKIKTVDGIQAKQDVAAGYLEKFRQKVEFYGNRYYPEAAKQQQLAGEVRLMVILNANGGIRAIRLIE
SSGHAMLDEAAKASVRKAAPFGAFDAKMKDISELRIIRTWRFDPAEAEFEVR

Nucleotide


Download         Length: 879 bp        

>NTDB_id=392142 GA660_RS12025 WP_005182159.1 2524330..2525208(-) (tonB2) [Acinetobacter indicus strain TQ04]
ATGTTAAAGAAATTTCATTTTGCACCTTTGACGCAGCAGTGGTGGAAAGATCCACTATTTGGCACCGTACTGACGCTGGC
GGCACTTTCGCATCTGGCTGTGTTAACGGTGCAATTTGTCATGCCACAGCAAAGCGATGCCGCGGTCAAGGAAATTGCGG
TCAGCTTAAGGCCAAGTGCCACCGAAATTAAGGACGCCGACTTTTTAGCACAGGCCGATCAGCAAGGTTCTGGCACCTTC
CGGGAAGCGCACCGCATGTCCAGCGATATGCCCGCACCAATGATTGAACAGAGTGCCGGTGATCAGCAGCTGGAAAGTCT
TGAGCGTTTGCAGCAGCAGCGTGAACTGAGCTTTGAAGAAAAAGTGCTAATGACCACCTTAAGCTGGCAAAAGCAGGCGG
CGGAAAACCAGCGTAAAAAAGCGCTGGAAGAATTAAACAGCCAGTTTCAGGCCAAAGCGGCGATGGTGGCCAGTCTGGAA
GCGCAGTATTTACAGCGTCAGCAAAATTTCAGCCGTCAGCAGAAAATTAAAACCGTAGATGGAATTCAGGCCAAGCAGGA
TGTCGCGGCCGGTTATCTGGAAAAATTCCGTCAGAAAGTCGAATTTTATGGTAATCGTTATTATCCGGAAGCGGCCAAGC
AGCAACAGCTGGCCGGTGAAGTACGTTTAATGGTGATTTTAAATGCCAACGGCGGGATTCGCGCGATTCGTTTAATTGAA
AGCTCGGGACATGCCATGCTGGATGAAGCTGCCAAGGCTTCTGTGCGTAAAGCTGCTCCTTTTGGTGCCTTTGATGCCAA
GATGAAAGATATTTCCGAGCTACGCATTATCCGGACCTGGCGTTTTGACCCGGCTGAGGCGGAGTTTGAGGTGCGCTAG

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(205-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9KSY6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

76.344

95.548

0.729

Multiple sequence alignment