Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   GA660_RS08125 Genome accession   NZ_CP045129
Coordinates   1723425..1723769 (-) Length   114 a.a.
NCBI ID   WP_252725315.1    Uniprot ID   -
Organism   Acinetobacter indicus strain TQ04     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1718425..1728769
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GA660_RS08095 tadA 1718668..1719189 (-) 522 WP_160241357.1 tRNA adenosine(34) deaminase TadA -
  GA660_RS08100 - 1719193..1720317 (-) 1125 WP_005177517.1 enoyl-CoA hydratase/isomerase family protein -
  GA660_RS08105 ung 1720314..1721027 (-) 714 WP_005177514.1 uracil-DNA glycosylase -
  GA660_RS08110 - 1721069..1721665 (-) 597 WP_045795751.1 6-pyruvoyl trahydropterin synthase family protein -
  GA660_RS08115 gspK 1721813..1722772 (-) 960 WP_171296439.1 type II secretion system minor pseudopilin GspK -
  GA660_RS08120 xcpW 1722793..1723428 (-) 636 WP_160241358.1 type II secretion system minor pseudopilin GspJ Machinery gene
  GA660_RS08125 xcpV 1723425..1723769 (-) 345 WP_252725315.1 type II secretion system protein Machinery gene
  GA660_RS08130 - 1723912..1724484 (-) 573 WP_160241360.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  GA660_RS08135 - 1724490..1725104 (-) 615 WP_075166784.1 TetR/AcrR family transcriptional regulator -
  GA660_RS08140 - 1725165..1725938 (-) 774 WP_005177502.1 TatD family hydrolase -
  GA660_RS08145 - 1725968..1726309 (-) 342 WP_005177501.1 PilZ domain-containing protein -
  GA660_RS08150 - 1726321..1727304 (-) 984 WP_160241361.1 DNA polymerase III subunit delta' -
  GA660_RS08155 kdsB 1727313..1728077 (-) 765 WP_160241362.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 114 a.a.        Molecular weight: 12632.40 Da        Isoelectric Point: 6.2041

>NTDB_id=392135 GA660_RS08125 WP_252725315.1 1723425..1723769(-) (xcpV) [Acinetobacter indicus strain TQ04]
MVALAIFATAAMALTQVAMQYTQSTSHAILRTKAQFMALNEQALMEIQQDWLTGTQSKQVTLQGESWQIDKSAQPTISPN
VQRVEVQVSLFNPDTGQVEAGITHLVFFNHRVAQ

Nucleotide


Download         Length: 345 bp        

>NTDB_id=392135 GA660_RS08125 WP_252725315.1 1723425..1723769(-) (xcpV) [Acinetobacter indicus strain TQ04]
ATGGTGGCACTGGCGATTTTCGCTACAGCGGCCATGGCGCTGACTCAAGTGGCCATGCAATATACCCAGTCCACCTCTCA
TGCCATTTTAAGAACCAAAGCGCAGTTTATGGCCTTAAATGAACAGGCTCTAATGGAAATCCAGCAGGACTGGCTGACGG
GTACGCAATCAAAACAGGTCACCCTGCAAGGTGAAAGCTGGCAAATTGATAAAAGCGCACAGCCCACCATTAGCCCGAAT
GTGCAGCGGGTAGAGGTGCAGGTCAGCTTATTTAACCCCGATACCGGACAAGTAGAAGCCGGGATCACCCATTTGGTGTT
TTTTAATCATCGGGTGGCGCAATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(31-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

75.893

98.246

0.746

Multiple sequence alignment