Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   GA646_RS14140 Genome accession   NZ_CP045127
Coordinates   2791539..2792696 (+) Length   385 a.a.
NCBI ID   WP_160255772.1    Uniprot ID   -
Organism   Acinetobacter indicus strain XG03     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2786539..2797696
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GA646_RS14125 - 2788275..2790308 (-) 2034 WP_160255771.1 TonB-dependent copper receptor -
  GA646_RS14130 - 2790382..2790804 (-) 423 WP_016658991.1 DUF2946 family protein -
  GA646_RS14135 def 2790895..2791419 (-) 525 WP_005181462.1 peptide deformylase -
  GA646_RS14140 tsaP 2791539..2792696 (+) 1158 WP_160255772.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  GA646_RS14145 dprA 2792713..2793855 (+) 1143 WP_075168149.1 DNA-processing protein DprA Machinery gene
  GA646_RS14150 - 2793900..2794466 (+) 567 WP_005181449.1 L-threonylcarbamoyladenylate synthase -
  GA646_RS14155 - 2794847..2795758 (-) 912 WP_005181447.1 DMT family transporter -
  GA646_RS14160 - 2796087..2796629 (+) 543 WP_104484688.1 glutathione peroxidase -
  GA646_RS14165 - 2796813..2797421 (+) 609 WP_075168152.1 hypothetical protein -

Sequence

Protein


Download         Length: 385 a.a.        Molecular weight: 42579.58 Da        Isoelectric Point: 8.5533

>NTDB_id=392110 GA646_RS14140 WP_160255772.1 2791539..2792696(+) (tsaP) [Acinetobacter indicus strain XG03]
MKKVLKGTSSFRALGLKQQALALAVCFSFGVGAVSTVQAAPARNINPPTLQANAPNVYVVKKGDTLWDISKKFLQNPLRW
REIWASNKHVKNPHWIFPGDRLLMCTYDDRPIIGKDEGDGCEGIIRRYTGNTTSLQPQIRVESLNNTIPVIPLEYIQHWL
ERTSIIAPESLQQTPYILGTADQRVLAAKGQNVYARGQGLQVGQRYAVYREGEPYIFTDANGKKYNAGLELTQVASGIAV
RGENDITTLELTDTYNAEVRRGDRVLPEYDPMLPTLFYPTNAEHIAADGQVVRVMGSIGTAAKHSVVTIDRGQAHGVQSG
HVFAVTQKGEVVTDPKTRERVQLPGERIGYAMVFKTFDQLSYAYILDSELPIKVGAGIQPPIMED

Nucleotide


Download         Length: 1158 bp        

>NTDB_id=392110 GA646_RS14140 WP_160255772.1 2791539..2792696(+) (tsaP) [Acinetobacter indicus strain XG03]
ATGAAAAAGGTTTTGAAGGGCACATCTTCTTTTCGTGCCTTGGGGTTAAAACAGCAGGCGCTGGCACTTGCTGTCTGTTT
CAGTTTTGGGGTGGGCGCAGTCAGTACTGTACAGGCCGCACCGGCACGCAATATCAACCCACCGACCTTACAGGCCAATG
CACCAAATGTGTATGTGGTGAAAAAAGGCGATACGCTGTGGGATATTTCCAAGAAGTTTCTGCAAAACCCGCTGCGCTGG
CGTGAAATCTGGGCCAGCAACAAGCACGTGAAAAATCCGCACTGGATTTTCCCGGGAGATCGCCTGCTGATGTGTACCTA
TGATGACCGCCCGATCATTGGTAAAGATGAAGGTGATGGCTGTGAAGGTATTATCCGTCGTTATACCGGTAACACCACCA
GCCTGCAGCCGCAAATCCGGGTCGAGTCACTCAACAATACCATTCCGGTGATTCCACTGGAGTACATCCAGCACTGGCTG
GAACGTACCAGCATTATTGCCCCTGAATCTTTGCAACAGACGCCTTATATTTTAGGCACGGCGGATCAGCGTGTCCTGGC
GGCCAAAGGCCAGAATGTCTATGCCCGCGGTCAGGGTCTGCAAGTTGGCCAGCGTTATGCTGTGTATCGTGAAGGCGAAC
CGTATATCTTCACCGATGCCAACGGTAAAAAATACAATGCCGGTCTGGAGCTGACTCAGGTTGCATCCGGTATTGCAGTA
CGCGGTGAAAATGATATTACCACCCTGGAACTGACCGATACCTACAATGCCGAAGTGCGTCGTGGCGATCGTGTGCTGCC
AGAATATGACCCGATGTTACCAACCCTATTCTACCCGACCAATGCCGAACACATTGCAGCAGATGGCCAGGTGGTACGCG
TGATGGGTTCAATTGGTACCGCAGCTAAACACAGTGTGGTCACCATTGACCGCGGTCAGGCGCACGGCGTGCAATCCGGT
CATGTATTTGCTGTAACTCAAAAAGGCGAAGTGGTCACCGATCCGAAAACCCGTGAACGGGTGCAGCTGCCAGGCGAGCG
TATTGGCTATGCCATGGTCTTTAAAACCTTTGACCAGCTCAGCTATGCCTATATTCTGGACAGCGAACTACCAATTAAAG
TCGGGGCCGGTATTCAGCCACCGATTATGGAAGATTAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

65.974

100

0.66

Multiple sequence alignment