Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   GA646_RS13740 Genome accession   NZ_CP045127
Coordinates   2704147..2704473 (-) Length   108 a.a.
NCBI ID   WP_104473371.1    Uniprot ID   -
Organism   Acinetobacter indicus strain XG03     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2699147..2709473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GA646_RS13720 - 2699343..2700050 (-) 708 WP_160255757.1 FHA domain-containing protein -
  GA646_RS13725 gspD 2700117..2702366 (-) 2250 WP_160255758.1 type II secretion system secretin GspD -
  GA646_RS13730 - 2702407..2703243 (-) 837 WP_160255759.1 type II secretion system protein N -
  GA646_RS13735 gspN 2703243..2703983 (-) 741 WP_160255760.1 type II secretion system protein N -
  GA646_RS13740 hns 2704147..2704473 (-) 327 WP_104473371.1 H-NS family nucleoid-associated regulatory protein Regulator
  GA646_RS13745 - 2704619..2705047 (-) 429 WP_016659684.1 acyl-CoA thioesterase -
  GA646_RS13750 - 2705058..2706251 (-) 1194 WP_104489938.1 hypothetical protein -
  GA646_RS13755 - 2706254..2707099 (-) 846 WP_104470520.1 hypothetical protein -
  GA646_RS13760 - 2707096..2707875 (-) 780 WP_075167812.1 uroporphyrinogen-III synthase -
  GA646_RS13765 hemC 2707877..2708794 (-) 918 WP_104500067.1 hydroxymethylbilane synthase -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12299.01 Da        Isoelectric Point: 6.4273

>NTDB_id=392105 GA646_RS13740 WP_104473371.1 2704147..2704473(-) (hns) [Acinetobacter indicus strain XG03]
MMPDISNLSVEQLKRLQEEAEALIASKKDQAVEDAYNQILAIAENAGLSIEQILEFGESKRKKNVRKSVEPRYRNKANAN
ETWTGRGKQPRWLVAELEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=392105 GA646_RS13740 WP_104473371.1 2704147..2704473(-) (hns) [Acinetobacter indicus strain XG03]
ATGATGCCCGATATTAGTAATTTGTCTGTAGAACAATTAAAGCGCTTGCAGGAAGAAGCGGAAGCATTAATTGCATCGAA
AAAGGACCAGGCAGTTGAAGATGCATATAATCAGATTTTGGCAATTGCTGAAAATGCGGGTTTAAGTATTGAACAGATTC
TTGAGTTTGGTGAGTCTAAACGTAAAAAGAATGTCCGTAAATCGGTAGAGCCGCGTTATCGTAATAAAGCCAATGCCAAT
GAAACCTGGACGGGTCGTGGTAAGCAACCACGCTGGTTAGTGGCGGAACTGGAAAAAGGTGCCAAGCTTGAAGACTTCTT
GATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

84.259

100

0.843

Multiple sequence alignment