Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   GA646_RS13270 Genome accession   NZ_CP045127
Coordinates   2596129..2598351 (+) Length   740 a.a.
NCBI ID   WP_104498470.1    Uniprot ID   -
Organism   Acinetobacter indicus strain XG03     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2591129..2603351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GA646_RS13250 lnt 2591961..2593520 (+) 1560 WP_104473746.1 apolipoprotein N-acyltransferase -
  GA646_RS13255 - 2593663..2593998 (-) 336 WP_045795389.1 hypothetical protein -
  GA646_RS13260 gspG 2594278..2594715 (-) 438 WP_005181871.1 type II secretion system major pseudopilin GspG -
  GA646_RS13265 gspF 2594772..2595977 (-) 1206 WP_005181870.1 type II secretion system inner membrane protein GspF -
  GA646_RS13270 priA 2596129..2598351 (+) 2223 WP_104498470.1 primosomal protein N' Machinery gene
  GA646_RS13275 - 2598401..2600242 (+) 1842 WP_104498471.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  GA646_RS13280 - 2600293..2601168 (+) 876 WP_005181862.1 Hsp33 family molecular chaperone HslO -
  GA646_RS13285 - 2601580..2602041 (+) 462 WP_005181860.1 DUF2147 domain-containing protein -
  GA646_RS13290 - 2602434..2602772 (+) 339 WP_005181858.1 chaperone modulator CbpM -
  GA646_RS13295 - 2602849..2603118 (+) 270 WP_034598128.1 YdcH family protein -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 84049.18 Da        Isoelectric Point: 8.5940

>NTDB_id=392101 GA646_RS13270 WP_104498470.1 2596129..2598351(+) (priA) [Acinetobacter indicus strain XG03]
MPNSPVHPAPIYRVRVAVPVYLYDGFDYMLSAAEYQQAAVGARVLVSFGRQNLVGIIIEKLPPDHPLDPKIKLKAISELL
DQQPILDQKVLTLLTWSAQYYQFPIGEVMHSALPSLLRQGRPYNLLARMWKLLDDQAEAKLKRSEKQQEAYKVLKLHPSG
TSENILNLAGIETATLKALEKKQICCCDLEQQDFSPVPMTLAQMPLTPNSDQKQAIETVLKAQHRYQAFLLDGLTGSGKT
EVYLQIMQEVLKQGKQVLVLVPEIGLTPQTISRFQSRFHCHIALLHSGLNDSKRLQAWQAAQTGKASIILGTRSAIYTPL
PNLGLIILDEEHDLSFKQQEGFRYHARDVALYRAHLEHCPVILGSATPSIDSYALTEQGKMTRLELNQRAGPALMPKIHI
IDLKVAQKQLGLSLLLIQEIKKCLQKKEQVLIFLNRRGYAPVLVCDSCGWQAQCPHCDANFTLHHSPYTHLHCHHCGTIH
RKPEQCPQCQHSELKTLGMGTAKVEENLQQLFPDYEVVRVDRDSTSRVGSWQKIYDRIQTSQPLILLGTQMLAKGHHFPY
VTLVAILDIDAGLLSVDIRAPERTAQLIVQVAGRAGRGEHKGDVYLQTLRPDHPLLSTLVEQDYRAFARQTLKERQAALL
PPFRYTALIRCESKSQEQNQQFLQQHAQWLRENSEQLIDIWGPIPAPMERKAGRYQAHLVLLSQDRARLHFYLRAWWQNM
LHHKPSNMKLSLDIDPQEFS

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=392101 GA646_RS13270 WP_104498470.1 2596129..2598351(+) (priA) [Acinetobacter indicus strain XG03]
ATGCCAAATTCGCCCGTCCATCCCGCCCCCATCTACCGTGTTCGTGTAGCTGTTCCGGTCTATCTGTATGACGGGTTTGA
CTATATGCTCAGTGCGGCTGAATATCAGCAGGCTGCCGTTGGCGCGCGGGTGCTGGTGTCCTTTGGCCGGCAGAATCTGG
TGGGCATCATTATTGAAAAACTCCCGCCCGATCATCCGCTTGACCCCAAGATTAAACTGAAAGCCATTAGCGAGCTGCTC
GACCAGCAACCGATTCTAGATCAGAAAGTTTTAACTTTGTTGACATGGTCGGCGCAGTATTATCAGTTTCCGATTGGCGA
AGTGATGCATAGCGCCCTGCCCAGCCTGTTACGTCAGGGACGCCCCTATAATTTACTGGCACGAATGTGGAAACTACTGG
ATGATCAGGCCGAAGCCAAACTGAAGCGCTCCGAGAAGCAGCAGGAGGCCTATAAAGTCCTGAAGCTGCATCCGAGCGGG
ACCTCAGAAAATATCCTGAATCTGGCCGGTATTGAAACTGCAACATTAAAAGCACTGGAAAAAAAGCAGATTTGCTGCTG
CGATCTGGAACAGCAGGATTTTAGCCCAGTGCCAATGACGCTGGCGCAAATGCCGTTAACCCCGAACAGCGACCAGAAAC
AGGCCATTGAAACCGTACTGAAAGCACAGCATCGTTATCAGGCCTTTTTACTCGATGGTCTGACCGGCAGTGGTAAAACC
GAAGTCTATCTGCAGATCATGCAGGAAGTGCTAAAACAGGGAAAACAGGTATTGGTGCTGGTGCCGGAAATTGGCCTGAC
CCCTCAAACCATTAGCCGCTTCCAGTCTCGTTTTCACTGTCATATCGCGCTGCTGCATTCCGGTTTAAATGACAGCAAAC
GTCTGCAGGCCTGGCAGGCCGCCCAGACTGGCAAAGCCTCCATTATTCTTGGTACGCGCTCGGCAATTTATACCCCGCTG
CCCAATTTGGGGCTGATTATTCTGGATGAAGAACACGACCTGTCATTTAAACAGCAGGAAGGCTTTCGTTACCATGCCCG
CGATGTGGCCTTATACCGTGCCCATTTAGAACACTGCCCGGTGATTCTCGGTTCAGCAACCCCCAGCATTGACAGCTATG
CCTTGACCGAACAGGGTAAAATGACCCGTCTGGAACTGAACCAGCGCGCTGGCCCGGCACTCATGCCCAAAATTCACATC
ATTGACTTAAAAGTTGCGCAAAAACAGCTAGGTCTAAGCCTGCTGCTGATTCAGGAAATCAAGAAATGCCTGCAGAAAAA
AGAACAGGTGCTAATTTTCTTAAACCGCCGTGGTTATGCACCGGTGCTGGTCTGTGACAGCTGCGGCTGGCAGGCACAAT
GCCCACACTGTGATGCCAATTTTACCCTGCATCATAGTCCATATACCCATCTGCATTGTCATCATTGTGGCACCATTCAC
CGCAAGCCGGAGCAATGTCCGCAGTGCCAGCATAGCGAACTGAAAACCCTGGGTATGGGCACAGCCAAGGTTGAAGAAAA
CCTACAACAGCTGTTCCCGGACTATGAGGTGGTGCGGGTAGACCGCGATTCCACCAGCCGCGTCGGCAGCTGGCAAAAAA
TTTATGACCGCATTCAAACCAGCCAGCCGCTGATTCTACTCGGCACCCAAATGCTGGCCAAGGGCCATCATTTTCCTTAT
GTCACCTTAGTAGCGATTTTAGATATTGATGCTGGCCTGTTAAGTGTTGATATCCGGGCACCGGAACGGACTGCGCAGCT
GATTGTGCAGGTGGCCGGTCGTGCCGGTCGCGGTGAGCATAAAGGCGATGTCTATTTACAGACCCTGCGTCCTGATCATC
CGCTGCTGAGCACCCTGGTCGAGCAGGATTATCGTGCCTTTGCCCGGCAAACCTTAAAAGAACGTCAGGCCGCCCTGCTG
CCCCCGTTTCGCTATACCGCCCTGATTCGCTGCGAATCCAAAAGTCAGGAGCAGAATCAGCAGTTTTTACAGCAACATGC
CCAGTGGCTGCGAGAAAATTCTGAACAGTTAATTGATATCTGGGGACCGATTCCAGCGCCAATGGAACGCAAGGCCGGCC
GCTATCAGGCCCATTTAGTATTGTTGTCGCAAGATCGTGCCCGTTTACATTTTTATCTACGTGCATGGTGGCAAAATATG
TTGCATCACAAGCCATCAAATATGAAACTTAGCTTAGATATAGACCCTCAGGAATTCAGTTAA

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(642-736)

Type III restriction enzyme, res subunit (ResIII)

(207-369)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

73.585

100

0.738

Multiple sequence alignment