Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   GA646_RS12690 Genome accession   NZ_CP045127
Coordinates   2481376..2482254 (-) Length   292 a.a.
NCBI ID   WP_005182159.1    Uniprot ID   N9KSY6
Organism   Acinetobacter indicus strain XG03     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2476376..2487254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GA646_RS12670 miaB 2477928..2479382 (+) 1455 WP_005182171.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  GA646_RS12675 - 2479424..2480497 (+) 1074 WP_016659561.1 PhoH family protein -
  GA646_RS12680 ybeY 2480517..2480999 (+) 483 WP_005182166.1 rRNA maturation RNase YbeY -
  GA646_RS12685 - 2481089..2481379 (+) 291 WP_104470747.1 antibiotic biosynthesis monooxygenase family protein -
  GA646_RS12690 tonB2 2481376..2482254 (-) 879 WP_005182159.1 energy transducer TonB Machinery gene
  GA646_RS12695 - 2482494..2483177 (+) 684 WP_160255734.1 hypothetical protein -
  GA646_RS12700 - 2483331..2484044 (+) 714 WP_005182145.1 DUF3108 domain-containing protein -
  GA646_RS12705 - 2484134..2484709 (+) 576 WP_005182137.1 xanthine phosphoribosyltransferase -
  GA646_RS12710 - 2484926..2485306 (+) 381 WP_005182135.1 hypothetical protein -
  GA646_RS12715 - 2485390..2485566 (-) 177 WP_158649863.1 hypothetical protein -
  GA646_RS12720 wrbA 2485868..2486464 (-) 597 WP_104470746.1 NAD(P)H:quinone oxidoreductase -

Sequence

Protein


Download         Length: 292 a.a.        Molecular weight: 33024.72 Da        Isoelectric Point: 9.1867

>NTDB_id=392100 GA646_RS12690 WP_005182159.1 2481376..2482254(-) (tonB2) [Acinetobacter indicus strain XG03]
MLKKFHFAPLTQQWWKDPLFGTVLTLAALSHLAVLTVQFVMPQQSDAAVKEIAVSLRPSATEIKDADFLAQADQQGSGTF
REAHRMSSDMPAPMIEQSAGDQQLESLERLQQQRELSFEEKVLMTTLSWQKQAAENQRKKALEELNSQFQAKAAMVASLE
AQYLQRQQNFSRQQKIKTVDGIQAKQDVAAGYLEKFRQKVEFYGNRYYPEAAKQQQLAGEVRLMVILNANGGIRAIRLIE
SSGHAMLDEAAKASVRKAAPFGAFDAKMKDISELRIIRTWRFDPAEAEFEVR

Nucleotide


Download         Length: 879 bp        

>NTDB_id=392100 GA646_RS12690 WP_005182159.1 2481376..2482254(-) (tonB2) [Acinetobacter indicus strain XG03]
ATGTTAAAGAAATTTCATTTTGCACCTTTGACGCAGCAGTGGTGGAAAGATCCACTATTTGGCACCGTACTGACGCTGGC
GGCACTTTCGCATCTGGCTGTGTTAACGGTGCAATTTGTCATGCCACAGCAAAGCGATGCCGCGGTCAAGGAAATTGCGG
TCAGCTTAAGGCCAAGTGCCACCGAAATTAAGGACGCCGACTTTTTAGCACAGGCCGATCAGCAAGGTTCTGGCACCTTC
CGGGAAGCGCACCGCATGTCCAGCGATATGCCCGCACCAATGATTGAACAGAGTGCCGGTGATCAGCAGCTGGAAAGTCT
GGAGCGTTTGCAGCAGCAGCGTGAACTGAGCTTTGAAGAAAAAGTGCTAATGACTACCTTAAGCTGGCAAAAGCAGGCGG
CCGAAAACCAGCGTAAAAAAGCGCTGGAAGAATTGAACAGCCAGTTTCAGGCCAAAGCGGCGATGGTGGCCAGTCTGGAA
GCGCAGTATTTACAGCGTCAGCAAAATTTTAGCCGTCAGCAGAAAATTAAAACCGTAGATGGAATTCAGGCCAAGCAGGA
TGTCGCAGCCGGTTATCTGGAAAAATTCCGTCAGAAAGTCGAATTTTATGGTAACCGTTATTATCCGGAAGCAGCCAAGC
AGCAACAGCTGGCCGGTGAAGTGCGTTTAATGGTGATTTTAAATGCCAACGGCGGGATTCGCGCGATTCGTTTAATTGAA
AGCTCGGGGCATGCCATGCTGGATGAAGCTGCCAAGGCTTCTGTGCGTAAAGCTGCTCCTTTTGGTGCCTTTGATGCCAA
GATGAAAGATATTTCCGAGCTGCGCATTATCCGGACCTGGCGTTTTGACCCGGCTGAGGCGGAGTTTGAGGTGCGCTAG

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(205-282)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9KSY6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

76.344

95.548

0.729

Multiple sequence alignment