Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   HO403_RS11540 Genome accession   NZ_CP053592
Coordinates   2454890..2456317 (-) Length   475 a.a.
NCBI ID   WP_000980563.1    Uniprot ID   -
Organism   Escherichia coli strain NEBExpress_Iq     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2449890..2461317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HO403_RS11510 (HO403_11515) yeeZ 2449945..2450769 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  HO403_RS11515 (HO403_11520) yeeY 2450815..2451744 (+) 930 WP_000803363.1 LysR substrate-binding domain-containing protein -
  HO403_RS11520 (HO403_11525) yoeI 2451959..2452021 (+) 63 WP_010723108.1 membrane protein YoeI -
  HO403_RS11525 (HO403_11530) plaP 2452011..2453369 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  HO403_RS11530 (HO403_11535) tsuA 2453548..2454606 (+) 1059 WP_000492348.1 thiosulfate utilization transporter TsuA/YeeE -
  HO403_RS11535 (HO403_11540) tsuB 2454620..2454847 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  HO403_RS11540 (HO403_11545) sbcB 2454890..2456317 (-) 1428 WP_000980563.1 exodeoxyribonuclease I Machinery gene
  HO403_RS11545 (HO403_11550) dacD 2456526..2457692 (+) 1167 WP_001320295.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  HO403_RS11550 (HO403_11555) sbmC 2457811..2458284 (+) 474 WP_001105393.1 DNA gyrase inhibitor SbmC -
  HO403_RS11555 (HO403_11560) yeeA 2458482..2459540 (+) 1059 WP_001200905.1 FUSC family protein -
  HO403_RS11560 (HO403_11565) tmaR 2459712..2460041 (+) 330 WP_000450409.1 DUF496 family protein -
  HO403_RS11565 (HO403_11570) - 2460142..2460324 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  HO403_RS11570 (HO403_11575) - 2460378..2460524 (+) 147 Protein_2267 transposase domain-containing protein -
  HO403_RS11575 (HO403_11580) - 2460813..2460893 (-) 81 Protein_2268 hypothetical protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54484.77 Da        Isoelectric Point: 5.6054

>NTDB_id=392091 HO403_RS11540 WP_000980563.1 2454890..2456317(-) (sbcB) [Escherichia coli strain NEBExpress_Iq]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDNEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAQEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=392091 HO403_RS11540 WP_000980563.1 2454890..2456317(-) (sbcB) [Escherichia coli strain NEBExpress_Iq]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGAACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACTGATAACGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGATGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGT
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTACTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAATGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGAGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTTGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTACGCTGATGAATTGCAGATGCTGGCACAACAGT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGCAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.723

98.947

0.581