Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GBA63_RS14520 Genome accession   NZ_CP045119
Coordinates   2887791..2889173 (-) Length   460 a.a.
NCBI ID   WP_166177174.1    Uniprot ID   A0A6G8QB67
Organism   Rubrobacter tropicus strain SCSIO 52909     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2882791..2894173
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GBA63_RS14500 (GBA63_14310) - 2884161..2885474 (-) 1314 WP_166177166.1 glutamate--tRNA ligase -
  GBA63_RS14505 (GBA63_14315) ispF 2885479..2885958 (-) 480 WP_166177168.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  GBA63_RS14510 (GBA63_14320) ispD 2885958..2886686 (-) 729 WP_166177170.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  GBA63_RS14515 (GBA63_14325) disA 2886709..2887773 (-) 1065 WP_166177172.1 DNA integrity scanning diadenylate cyclase DisA -
  GBA63_RS14520 (GBA63_14330) radA 2887791..2889173 (-) 1383 WP_166177174.1 DNA repair protein RadA Machinery gene
  GBA63_RS14525 (GBA63_14335) - 2889249..2889893 (+) 645 WP_207956807.1 hypothetical protein -
  GBA63_RS14530 (GBA63_14340) - 2890218..2891381 (+) 1164 WP_166177178.1 DUF4352 domain-containing protein -
  GBA63_RS14535 (GBA63_14345) - 2891484..2894003 (-) 2520 WP_166177180.1 ATP-dependent Clp protease ATP-binding subunit -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 48503.71 Da        Isoelectric Point: 5.6214

>NTDB_id=392059 GBA63_RS14520 WP_166177174.1 2887791..2889173(-) (radA) [Rubrobacter tropicus strain SCSIO 52909]
MATKTLYVCSNCGHQAPKWLGRCPDCGEWSTFVEEAREAKKVVGFAERATRKKTGAAGRTLRLDQVEAAADGGRIGTSVA
ELDRVLGGGIVPGSMVLVGGEPGVGKSTLLLQVMGHLGEGCLMVSGEESPRQVALSAKRLGVQGAGFSVLSETDVDVIEA
TILEERPTVVVVDSIQTLYSPELSGAPGGVGQVRECAARLMRLAKSEGIAVVLVGHVTKDGSIAGPRVLEHMVDTVLQFE
GDRFQSFRVLRALKNRFGSTNEIGVFEMTGRGMVEVEDPSAFFLSKREEKMPSGVATVCLLEGTRPMLVEIESLVAPSPL
ANPRRIANGVDTGRVNMLCAVLARRAGLSLADQDVYVNVTGGVRVEEPAADLGVALAIASALRDKPVGKGTACFGEVGLT
GDVRFVSGAPRRTGEVLKMGYGRIIRPEGTSDEGFDARTRKDASVIEVSTLEEAVAVALL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=392059 GBA63_RS14520 WP_166177174.1 2887791..2889173(-) (radA) [Rubrobacter tropicus strain SCSIO 52909]
ATGGCTACAAAGACGCTTTACGTTTGCTCGAACTGCGGGCACCAGGCTCCGAAGTGGCTCGGGCGCTGTCCCGATTGCGG
GGAGTGGAGTACGTTCGTCGAGGAGGCGCGCGAGGCGAAGAAGGTGGTCGGCTTCGCGGAGCGGGCGACGAGGAAGAAGA
CGGGGGCGGCAGGCAGGACGCTGAGGTTGGATCAGGTCGAGGCAGCCGCCGACGGAGGCCGGATCGGCACGAGCGTCGCG
GAACTCGACCGGGTACTCGGCGGCGGCATAGTCCCGGGCTCTATGGTCCTCGTCGGCGGGGAGCCCGGCGTCGGCAAGAG
CACGCTGCTGTTGCAGGTGATGGGCCACCTCGGCGAGGGCTGCCTGATGGTCTCCGGCGAGGAGTCGCCGCGGCAGGTGG
CGCTCTCCGCGAAGCGGCTCGGGGTGCAGGGCGCGGGTTTCAGCGTGCTCTCGGAGACGGACGTGGACGTCATCGAGGCG
ACCATACTGGAGGAGCGCCCGACCGTCGTCGTCGTCGATTCGATCCAGACGCTCTACTCGCCCGAACTCTCCGGTGCCCC
GGGAGGGGTCGGGCAGGTGCGCGAGTGCGCGGCCAGGCTGATGCGGCTGGCAAAGAGCGAGGGGATAGCCGTGGTCCTGG
TGGGCCACGTCACGAAGGACGGGTCCATCGCGGGGCCGCGGGTTTTGGAGCACATGGTCGACACGGTCCTCCAGTTCGAG
GGGGACAGGTTCCAGTCTTTCCGGGTTTTGCGGGCCTTGAAGAACCGGTTCGGTTCGACCAACGAGATCGGGGTCTTCGA
GATGACGGGCCGGGGGATGGTCGAGGTCGAGGACCCGTCGGCTTTCTTCCTCTCCAAGAGGGAGGAGAAGATGCCCTCGG
GGGTGGCGACGGTGTGTTTGCTGGAGGGGACGCGGCCGATGCTGGTCGAGATAGAGAGCCTGGTAGCACCCAGCCCGCTC
GCGAACCCGCGCAGGATCGCCAACGGCGTCGATACGGGCCGGGTGAACATGCTCTGCGCGGTGCTGGCGCGGCGCGCCGG
CCTCTCGCTGGCCGACCAGGACGTCTACGTCAACGTGACGGGCGGGGTGCGGGTCGAGGAGCCGGCGGCCGACCTCGGGG
TGGCGCTCGCGATAGCCTCCGCGCTGCGGGACAAGCCCGTCGGAAAAGGGACGGCCTGCTTCGGGGAGGTCGGGTTGACC
GGGGACGTGAGGTTCGTCTCCGGGGCGCCGCGGCGTACGGGGGAAGTCTTGAAGATGGGGTATGGGCGTATAATCAGGCC
CGAAGGAACGTCGGACGAGGGGTTTGATGCAAGAACCAGGAAGGACGCGAGCGTGATCGAGGTCAGTACGCTCGAGGAGG
CCGTGGCGGTGGCGCTACTGTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(74-221)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(7-34)

Subunit ChlI of Mg-chelatase (ChlI)

(345-428)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6G8QB67

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.373

100

0.485
  radA Streptococcus mitis NCTC 12261

47.577

98.696

0.47
  radA Streptococcus pneumoniae D39

47.357

98.696

0.467
  radA Streptococcus pneumoniae TIGR4

47.357

98.696

0.467
  radA Streptococcus pneumoniae R6

47.357

98.696

0.467
  radA Streptococcus pneumoniae Rx1

47.357

98.696

0.467
  radA Streptococcus mitis SK321

48.718

93.261

0.454

Multiple sequence alignment