Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB10   Type   Machinery gene
Locus tag   HK440_RS00435 Genome accession   NZ_CP053396
Coordinates   96031..97233 (+) Length   400 a.a.
NCBI ID   WP_001917652.1    Uniprot ID   -
Organism   Helicobacter pylori strain HPY     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 91031..102233
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HK440_RS00420 (HK440_00420) - 93064..93198 (+) 135 WP_000738749.1 hypothetical protein -
  HK440_RS00425 (HK440_00425) - 93191..94360 (+) 1170 WP_001917653.1 VirB8/TrbF family protein -
  HK440_RS00430 (HK440_00430) - 94357..96034 (+) 1678 Protein_84 TrbG/VirB9 family P-type conjugative transfer protein -
  HK440_RS00435 (HK440_00435) comB10 96031..97233 (+) 1203 WP_001917652.1 DNA type IV secretion system protein ComB10 Machinery gene
  HK440_RS00440 (HK440_00440) - 97217..99487 (+) 2271 WP_001917651.1 hypothetical protein -
  HK440_RS00445 (HK440_00445) - 99500..100477 (+) 978 WP_001917650.1 hypothetical protein -
  HK440_RS00450 (HK440_00450) - 100494..100766 (+) 273 WP_001917649.1 hypothetical protein -
  HK440_RS00455 (HK440_00455) - 100771..101715 (+) 945 WP_001917648.1 CpaF/VirB11 family protein -
  HK440_RS00460 (HK440_00460) - 101712..102230 (+) 519 WP_001917647.1 hypothetical protein -

Sequence

Protein


Download         Length: 400 a.a.        Molecular weight: 44725.37 Da        Isoelectric Point: 9.9018

>NTDB_id=392001 HK440_RS00435 WP_001917652.1 96031..97233(+) (comB10) [Helicobacter pylori strain HPY]
MKQSLLKKIGLVIGGFGALMALGLLANKGSNNNNKEEIYSIEESKFPLSDYFFEEVKEEPKKEENPKTITTPQPTAPTTA
NVSTNPIITDYSHLNSNLNKQNDTITHLQQVLQSPPKMKPKLKHTKEQLEFLNTRLKPLEPTKPATKPETEYGVDSFSNL
RYKDIGTNEHKLLRTITADRMIPAFLITPISSQIAGKVTAQVESDIFASMGRAVLIPKGSKVIGYYNNNNQIGQYRLNIA
WTRIITPQGINIMLTNARGADVKGYNGLVGKYISRNFQRYGIPLLTNTLSNGLLIGVTSALANQQNKKGDGNPFFGDYLL
MQLTRNTGMGINQVINQMLRQYGAQNPIIIIREGSRVFITPNLDIFIPKPKDGEVLAEFFKEKKPLIKKSNEEVNDEEEI

Nucleotide


Download         Length: 1203 bp        

>NTDB_id=392001 HK440_RS00435 WP_001917652.1 96031..97233(+) (comB10) [Helicobacter pylori strain HPY]
ATGAAACAATCCTTACTTAAAAAAATCGGCTTAGTTATAGGGGGCTTTGGTGCTTTAATGGCATTAGGATTGCTTGCTAA
TAAAGGTTCAAACAATAACAATAAAGAAGAAATTTACAGCATAGAAGAAAGTAAATTCCCCTTAAGCGATTATTTCTTTG
AAGAAGTCAAAGAAGAACCAAAAAAAGAAGAAAACCCCAAAACAATAACTACGCCACAACCTACAGCTCCAACTACTGCT
AATGTTTCAACTAATCCTATCATTACAGATTATAGTCATCTTAACAGCAATCTCAACAAGCAAAATGACACCATCACGCA
TTTACAACAAGTCTTACAAAGCCCCCCTAAAATGAAACCTAAATTAAAGCATACTAAAGAGCAATTAGAGTTTTTAAACA
CACGCCTTAAACCTTTAGAACCAACTAAACCAGCCACTAAGCCTGAGACGGAATATGGCGTGGATAGTTTTAGCAATTTA
AGATATAAAGACATCGGCACTAATGAGCATAAGCTCTTAAGAACTATAACCGCTGATAGAATGATACCAGCCTTTTTAAT
CACGCCTATTAGTTCTCAAATCGCTGGAAAAGTAACCGCCCAAGTAGAGAGCGATATATTTGCTTCTATGGGTAGAGCGG
TGCTAATCCCTAAAGGCTCTAAGGTTATAGGCTATTACAATAATAACAATCAAATTGGACAATACCGCCTTAACATTGCT
TGGACTAGAATTATCACGCCTCAAGGCATAAACATCATGCTCACTAACGCAAGGGGGGCTGATGTGAAGGGTTATAATGG
CTTAGTAGGCAAATACATTAGCCGAAACTTTCAACGCTATGGTATCCCCTTACTCACTAACACGCTCTCTAATGGTCTTT
TAATAGGAGTTACTTCAGCCTTAGCTAATCAACAAAATAAAAAAGGTGATGGCAACCCTTTTTTTGGGGATTACTTGCTT
ATGCAACTCACTAGAAACACAGGCATGGGGATTAACCAAGTTATCAATCAAATGCTAAGACAATATGGAGCGCAAAACCC
CATTATCATCATTAGAGAGGGGAGCAGAGTGTTTATTACCCCTAATTTAGACATCTTTATCCCTAAACCAAAAGATGGGG
AGGTTCTAGCGGAGTTTTTTAAAGAGAAAAAACCACTAATCAAAAAATCAAACGAGGAAGTTAATGATGAAGAAGAAATC
TAA

Domains

Predicted by InterProScan.

Bacterial conjugation TrbI-like protein (TrbI)

(175-365)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB10 Helicobacter pylori P1

52.926

98.25

0.52

Multiple sequence alignment