Detailed information
Bioinformatically predicted
Overview
| Name | comFC | Type | Machinery gene |
| Locus tag | HK440_RS00280 | Genome accession | NZ_CP053396 |
| Coordinates | 63967..64542 (+) | Length | 191 a.a. |
| NCBI ID | WP_001917083.1 | Uniprot ID | - |
| Organism | Helicobacter pylori strain HPY | ||
| Function | ssDNA transport into the cell (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 58967..69542
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HK440_RS00255 (HK440_00255) | uvrD | 59656..61701 (+) | 2046 | WP_001917089.1 | DNA helicase UvrD | - |
| HK440_RS00260 (HK440_00260) | flgA | 61698..62354 (+) | 657 | WP_001917088.1 | flagellar basal body P-ring formation chaperone FlgA | - |
| HK440_RS00265 (HK440_00265) | - | 62364..62927 (+) | 564 | WP_000780111.1 | UbiX family flavin prenyltransferase | - |
| HK440_RS00270 (HK440_00270) | coaD | 62927..63400 (+) | 474 | WP_001917087.1 | pantetheine-phosphate adenylyltransferase | - |
| HK440_RS00275 (HK440_00275) | tmk | 63404..63979 (+) | 576 | WP_001917085.1 | dTMP kinase | - |
| HK440_RS00280 (HK440_00280) | comFC | 63967..64542 (+) | 576 | WP_001917083.1 | ComF family protein | Machinery gene |
| HK440_RS00285 (HK440_00285) | - | 64575..66614 (+) | 2040 | WP_001917082.1 | N-6 DNA methylase | - |
| HK440_RS00290 (HK440_00290) | - | 66611..67846 (+) | 1236 | WP_001917081.1 | restriction endonuclease subunit S | - |
Sequence
Protein
Download Length: 191 a.a. Molecular weight: 21328.91 Da Isoelectric Point: 9.2796
>NTDB_id=391998 HK440_RS00280 WP_001917083.1 63967..64542(+) (comFC) [Helicobacter pylori strain HPY]
MRCLTCLKLSFKPLCSNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGTEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNAVSYAGKSLEFRTNNPRDFTFKGDKSLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
MRCLTCLKLSFKPLCSNCLNDLPLSLKVRVLEGVSVYSFYAYSEIEELIKSKYALIGSRILPLLSQKAGTEFVKILQEKG
LTTPLYGIAIDDKIKSFYSHSAALLKGFCQGNLKPTYGRLRANNAVSYAGKSLEFRTNNPRDFTFKGDKSLDYFLLDDII
TTGTTLKEALKYLKTLNIKAHFAIALCSADE
Nucleotide
Download Length: 576 bp
>NTDB_id=391998 HK440_RS00280 WP_001917083.1 63967..64542(+) (comFC) [Helicobacter pylori strain HPY]
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGTTCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGATCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCACGGAATTTGTGAAAATCTTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTAATAATGCTGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCACCAATAACCCACGGGATTTCACCTTCAAAGGCGATAAAAGTTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATTAAAGCGCACTTTGCGATCGCTCTTTG
CAGCGCGGATGAATGA
ATGCGTTGTTTAACTTGTTTGAAGCTTTCTTTTAAGCCCCTTTGTTCAAATTGCTTGAACGATTTGCCCTTAAGCTTAAA
GGTAAGGGTTTTAGAGGGCGTGAGCGTGTATAGTTTTTACGCTTATAGCGAAATAGAAGAACTCATTAAAAGCAAATACG
CGCTGATTGGATCTCGCATTTTGCCCTTGCTTTCTCAAAAAGCCGGCACGGAATTTGTGAAAATCTTGCAAGAAAAAGGC
TTGACTACCCCCCTTTATGGCATCGCCATTGATGATAAAATCAAATCCTTTTACTCGCATTCAGCCGCGCTTTTAAAAGG
CTTTTGTCAAGGCAATTTAAAGCCCACTTACGGGCGTTTAAGGGCTAATAATGCTGTTTCGTATGCCGGGAAAAGCTTAG
AATTTCGCACCAATAACCCACGGGATTTCACCTTCAAAGGCGATAAAAGTTTAGATTATTTTTTATTAGATGATATTATC
ACCACCGGCACCACCCTAAAAGAAGCCCTAAAATACCTTAAAACCCTAAACATTAAAGCGCACTTTGCGATCGCTCTTTG
CAGCGCGGATGAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comFC | Helicobacter pylori 26695 |
95.288 |
100 |
0.953 |