Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   GBN93_RS15690 Genome accession   NZ_CP045103
Coordinates   3274273..3275130 (-) Length   285 a.a.
NCBI ID   WP_148825457.1    Uniprot ID   A0AAJ6LGC5
Organism   Acinetobacter johnsonii strain AJ413     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3269273..3280130
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GBN93_RS15670 (GBN93_15725) - 3269536..3270612 (+) 1077 WP_004977846.1 PhoH family protein -
  GBN93_RS15675 (GBN93_15730) ybeY 3270670..3271149 (+) 480 WP_234964870.1 rRNA maturation RNase YbeY -
  GBN93_RS15680 (GBN93_15735) - 3271251..3271661 (+) 411 WP_234964871.1 hypothetical protein -
  GBN93_RS15685 (GBN93_15740) - 3271839..3273983 (-) 2145 WP_234964872.1 TonB-dependent siderophore receptor -
  GBN93_RS15690 (GBN93_15745) tonB2 3274273..3275130 (-) 858 WP_148825457.1 energy transducer TonB Machinery gene
  GBN93_RS15695 (GBN93_15750) - 3275392..3276069 (+) 678 WP_004977854.1 hypothetical protein -
  GBN93_RS15700 (GBN93_15755) - 3276225..3276935 (+) 711 WP_234951107.1 DUF3108 domain-containing protein -
  GBN93_RS15705 (GBN93_15760) - 3277026..3277601 (+) 576 WP_004691243.1 xanthine phosphoribosyltransferase -
  GBN93_RS15710 (GBN93_15765) - 3277878..3278930 (+) 1053 WP_234964873.1 sensor domain-containing diguanylate cyclase -
  GBN93_RS15715 (GBN93_15770) - 3279143..3279517 (+) 375 WP_168158596.1 hypothetical protein -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 32585.06 Da        Isoelectric Point: 6.3661

>NTDB_id=391962 GBN93_RS15690 WP_148825457.1 3274273..3275130(-) (tonB2) [Acinetobacter johnsonii strain AJ413]
MPLAHDWWKDPIFTATVVLAVFLHLVVLTLQFAMPQENDAAVKEIAVTLRPSDQKIENADFLAQADQQGSGTFRESHRMS
SDMPAPMLEQSTGEQQRETLEQIQQKRELNFEEKLLMTTLSWQKQAEDNQRKKAMEEMNSQFQAKAAMVASLEAQYLQRQ
QNFSRQQKIKTVDGIQAKQDISAAYLEKFRQKVEFYGNRYYPEAAKQQRLAGEVRLMVILNASGGIRAIRLIDSSGHEML
DEAAKASVRKAAPFGGFDAKMKDISELRIVRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 858 bp        

>NTDB_id=391962 GBN93_RS15690 WP_148825457.1 3274273..3275130(-) (tonB2) [Acinetobacter johnsonii strain AJ413]
ATGCCTTTGGCTCATGATTGGTGGAAAGACCCAATTTTTACAGCGACCGTTGTGCTGGCGGTGTTTTTGCATCTTGTAGT
TTTGACTTTGCAATTTGCGATGCCTCAAGAAAATGATGCGGCAGTGAAAGAAATTGCGGTTACCTTGCGTCCTTCTGATC
AAAAAATTGAAAATGCAGATTTTTTAGCGCAAGCCGATCAACAAGGTTCAGGGACCTTTCGTGAGTCACATCGCATGTCG
AGTGACATGCCCGCACCGATGCTTGAGCAAAGTACAGGCGAACAGCAGCGTGAAACTTTAGAACAGATCCAACAAAAACG
TGAGCTGAATTTTGAAGAAAAACTGTTAATGACGACTTTGAGTTGGCAAAAACAAGCTGAGGATAACCAGCGCAAAAAAG
CCATGGAAGAAATGAACAGTCAGTTTCAAGCCAAAGCAGCAATGGTGGCCAGCCTTGAAGCGCAATATTTACAACGCCAA
CAAAACTTTAGCCGTCAGCAAAAAATTAAAACAGTCGATGGTATTCAAGCTAAGCAAGATATTTCGGCCGCCTATCTTGA
AAAGTTCCGTCAGAAAGTGGAATTTTATGGCAACCGTTACTATCCAGAAGCAGCTAAACAGCAGCGGCTGGCGGGTGAAG
TGCGTTTAATGGTGATTCTAAATGCATCAGGAGGCATCCGCGCTATTCGTCTGATTGATAGTTCAGGCCATGAGATGCTT
GATGAGGCTGCAAAAGCCTCGGTGCGTAAAGCCGCACCATTTGGTGGATTTGATGCCAAAATGAAGGATATTTCTGAGTT
ACGTATTGTGCGTACATGGCGTTTTGACCCAGCAGAGGCAGAGTTTGAAGTGCACTGA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(198-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

74.643

98.246

0.733

Multiple sequence alignment