Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   GBN93_RS10165 Genome accession   NZ_CP045103
Coordinates   2151098..2151499 (-) Length   133 a.a.
NCBI ID   WP_234305022.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain AJ413     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2146098..2156499
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GBN93_RS10135 (GBN93_10180) tadA 2146354..2146854 (-) 501 WP_005401161.1 tRNA adenosine(34) deaminase TadA -
  GBN93_RS10140 (GBN93_10185) - 2146860..2147981 (-) 1122 WP_058951874.1 enoyl-CoA hydratase/isomerase family protein -
  GBN93_RS10145 (GBN93_10190) ung 2147978..2148691 (-) 714 WP_004696856.1 uracil-DNA glycosylase -
  GBN93_RS10150 (GBN93_10195) - 2148733..2149329 (-) 597 WP_234964275.1 6-pyruvoyl trahydropterin synthase family protein -
  GBN93_RS10155 (GBN93_10200) gspK 2149452..2150402 (-) 951 WP_234964276.1 type II secretion system minor pseudopilin GspK -
  GBN93_RS10160 (GBN93_10205) xcpW 2150481..2151101 (-) 621 WP_234964277.1 type II secretion system minor pseudopilin GspJ Machinery gene
  GBN93_RS10165 (GBN93_10210) xcpV 2151098..2151499 (-) 402 WP_234305022.1 type II secretion system minor pseudopilin GspI Machinery gene
  GBN93_RS10170 (GBN93_10215) - 2151534..2152103 (-) 570 WP_078425023.1 type II secretion system protein -
  GBN93_RS10175 (GBN93_10220) - 2152116..2152730 (-) 615 WP_004696845.1 TetR/AcrR family transcriptional regulator -
  GBN93_RS10180 (GBN93_10225) - 2152776..2153549 (-) 774 WP_234964278.1 TatD family hydrolase -
  GBN93_RS10185 (GBN93_10230) - 2153576..2153917 (-) 342 WP_234964279.1 PilZ domain-containing protein -
  GBN93_RS10190 (GBN93_10235) - 2153932..2154915 (-) 984 WP_234964280.1 DNA polymerase III subunit delta' -
  GBN93_RS10195 (GBN93_10240) kdsB 2154935..2155696 (-) 762 WP_234964281.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14703.76 Da        Isoelectric Point: 9.5634

>NTDB_id=391955 GBN93_RS10165 WP_234305022.1 2151098..2151499(-) (xcpV) [Acinetobacter johnsonii strain AJ413]
MKYYFINPRSGFTLLEVMVALAIFATAAVALTKVGMQYTQSTGHAILRTKSQFVALNEISMMEINRDWLQGTASKQITQQ
GETWQIDKSAQATISTNVQRVNVQVSLVNTETGKVDSGVTSLVFFNHRDGSQP

Nucleotide


Download         Length: 402 bp        

>NTDB_id=391955 GBN93_RS10165 WP_234305022.1 2151098..2151499(-) (xcpV) [Acinetobacter johnsonii strain AJ413]
ATGAAATATTATTTCATTAATCCTCGCTCAGGATTTACATTGCTAGAAGTGATGGTGGCGCTGGCTATTTTTGCTACAGC
AGCGGTCGCTTTAACCAAAGTTGGTATGCAATATACTCAGTCTACTGGACATGCGATTTTACGTACTAAGTCACAATTTG
TTGCCTTGAATGAAATTTCGATGATGGAAATCAATCGTGATTGGCTACAAGGCACGGCCTCTAAACAAATTACCCAACAA
GGTGAAACTTGGCAAATTGATAAATCAGCGCAAGCAACGATCAGTACTAATGTGCAACGTGTCAATGTACAAGTGAGCTT
GGTGAATACTGAAACTGGAAAAGTAGATTCGGGTGTTACGAGTTTAGTTTTTTTTAACCATCGTGATGGAAGCCAACCAT
GA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(48-107)

Prokaryotic N-terminal methylation motif (N_methyl)

(8-31)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

74.359

87.97

0.654

Multiple sequence alignment