Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   GBN93_RS01790 Genome accession   NZ_CP045103
Coordinates   383808..386030 (-) Length   740 a.a.
NCBI ID   WP_234965207.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain AJ413     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 378808..391030
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GBN93_RS01765 (GBN93_01775) - 378840..379196 (-) 357 WP_004978810.1 chaperone modulator CbpM -
  GBN93_RS01770 (GBN93_01780) - 379207..380160 (-) 954 WP_234965204.1 DnaJ C-terminal domain-containing protein -
  GBN93_RS01775 (GBN93_01785) - 380305..380757 (-) 453 WP_234965205.1 DUF2147 domain-containing protein -
  GBN93_RS01780 (GBN93_01790) - 380958..381833 (-) 876 WP_168159341.1 Hsp33 family molecular chaperone HslO -
  GBN93_RS01785 (GBN93_01795) - 381884..383725 (-) 1842 WP_234965206.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  GBN93_RS01790 (GBN93_01800) priA 383808..386030 (-) 2223 WP_234965207.1 primosomal protein N' Machinery gene
  GBN93_RS01795 (GBN93_01805) gspF 386183..387388 (+) 1206 WP_004692652.1 type II secretion system inner membrane protein GspF -
  GBN93_RS01800 (GBN93_01810) gspG 387422..387859 (+) 438 WP_058868821.1 type II secretion system major pseudopilin GspG -
  GBN93_RS01805 (GBN93_01815) - 388143..388478 (+) 336 WP_004978824.1 hypothetical protein -
  GBN93_RS01810 (GBN93_01820) - 388639..388977 (+) 339 WP_004978826.1 tRNA-binding protein -
  GBN93_RS01815 (GBN93_01825) lnt 389043..390602 (-) 1560 WP_234965208.1 apolipoprotein N-acyltransferase -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 84221.07 Da        Isoelectric Point: 8.8808

>NTDB_id=391943 GBN93_RS01790 WP_234965207.1 383808..386030(-) (priA) [Acinetobacter johnsonii strain AJ413]
MPENTLSTTPSYRIRVAVPVYLYDCFDYSLTAEQYHQAEVGARVAVSFGRQNVVGVIVEKLTDEKPLDLGFKLKAITELL
DDNAILDTKVLSLLTWSAQYYQFPIGEVMHAALPSFLRQGKPYNLLARMWKLIDDHAEDKLKRSEKQQDAYKILKLHPTG
TSENILNLAGIETATLKALEKKQITQCILETQDFKPQAMTLAQMPLTPNDEQKRAIQNILKARHSYHAFLLDGLTGSGKT
EVYLQVMQEVLKQGKQVLVLVPEIGLTPQTVSRFQSRFHCHIALLHSGLNDSKRLQAWQSAQTGRASIVIGTRSAIYTPL
PHLGLIVLDEEHDLSFKQQEGFRYHARDVALYRAHLENCPIILGSATPSIDSYALVEQGKMTRLELDQRAGVAVMPKMHV
IDLKVAQKQNGISQQLIHEVQKRLDKKEQVLIFLNRRGYAPVLICESCGWQAKCPHCDANFTVHRQPYQHLHCHHCGTIH
RMPEHCPQCQHSELKPIGLGTAKVEENLQALFPNFDVIRVDRDSTSRVGSWQKIYNKIQKSEPIILLGTQMLAKGHHFPY
VTLVAILDIDSGLLSVDFRATERTAQLIIQVAGRAGRGEKKGEVYLQTLRPDHPLLNTLLESGYRSFAKQTLKERKAAWM
PPYRYAALLRCESKDQELNQSFLQEHAQALRQASENSIDIWGPIPAPMERKAGRYQAHMVLLSKDRARMHFYIRQWWQNV
WHNKPHGMKLSLDIDPQELS

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=391943 GBN93_RS01790 WP_234965207.1 383808..386030(-) (priA) [Acinetobacter johnsonii strain AJ413]
ATGCCAGAAAATACACTTTCCACCACACCAAGCTACCGTATCCGCGTGGCTGTTCCCGTTTATCTATATGACTGTTTTGA
CTATAGTTTAACGGCTGAACAATACCACCAAGCTGAAGTGGGTGCACGTGTGGCTGTCTCATTTGGTCGCCAAAATGTGG
TCGGTGTCATTGTTGAGAAGCTCACTGATGAGAAACCACTCGATTTAGGCTTTAAACTTAAAGCCATAACTGAGTTGCTC
GATGACAACGCTATTCTAGATACTAAAGTTTTAAGTTTATTGACATGGTCAGCGCAATATTACCAATTTCCCATTGGTGA
AGTGATGCACGCTGCTTTGCCCAGCTTTTTACGCCAAGGCAAACCTTATAACCTACTGGCGCGGATGTGGAAGCTGATTG
ATGATCATGCCGAAGACAAATTAAAACGTTCAGAAAAACAACAAGATGCCTATAAAATTCTAAAGCTTCATCCCACCGGA
ACGTCTGAAAATATTTTAAATTTGGCTGGCATTGAAACTGCGACCTTAAAGGCCTTAGAAAAAAAGCAAATCACCCAGTG
CATACTTGAAACTCAAGACTTTAAACCACAAGCGATGACGCTAGCGCAAATGCCTCTCACGCCCAATGATGAACAAAAGC
GTGCCATTCAAAACATTCTCAAGGCTCGTCATAGCTACCACGCTTTCTTACTGGATGGTTTAACGGGTAGTGGGAAAACT
GAAGTCTATTTGCAAGTCATGCAAGAGGTTTTAAAACAAGGCAAACAAGTTTTGGTATTAGTGCCTGAAATTGGCCTCAC
CCCACAAACAGTGAGTCGTTTTCAGTCACGTTTTCACTGTCATATTGCGCTACTACATTCAGGTTTAAATGATTCTAAGC
GCCTGCAAGCCTGGCAAAGCGCACAAACGGGCAGAGCTTCGATTGTGATTGGGACACGTTCTGCCATCTATACGCCCCTT
CCGCATTTGGGTTTGATTGTCTTAGATGAAGAGCATGATCTATCTTTCAAGCAACAAGAAGGCTTCCGCTACCACGCTCG
TGATGTGGCTTTATACCGTGCACACTTAGAAAACTGTCCGATTATCCTCGGTTCTGCAACGCCAAGTATCGACAGTTATG
CATTGGTTGAACAAGGTAAAATGACCCGTTTGGAGTTGGACCAACGTGCAGGTGTGGCCGTGATGCCGAAAATGCATGTG
ATCGATCTGAAAGTGGCACAAAAACAAAATGGCATCAGCCAACAGCTGATTCATGAAGTACAAAAGCGCTTAGACAAAAA
AGAACAGGTGCTGATTTTTTTAAACCGTCGCGGCTATGCGCCTGTGTTGATTTGTGAAAGTTGTGGCTGGCAGGCGAAGT
GCCCCCACTGCGATGCCAATTTTACCGTGCATCGACAGCCCTACCAGCATTTGCACTGTCACCACTGCGGCACCATCCAC
CGCATGCCTGAACACTGCCCGCAATGTCAGCATAGCGAACTGAAACCAATTGGTTTAGGCACCGCAAAAGTTGAAGAAAA
CCTACAAGCACTGTTCCCAAATTTTGACGTAATTCGGGTTGATCGTGATTCGACCAGTCGAGTCGGCAGCTGGCAAAAAA
TCTATAACAAGATTCAGAAAAGTGAACCCATCATTTTGCTCGGCACCCAAATGCTGGCCAAAGGACATCACTTTCCTTAT
GTGACTTTAGTGGCGATTTTAGACATCGACTCAGGCCTACTCAGTGTTGACTTTCGTGCCACAGAACGTACTGCACAGCT
CATCATCCAAGTCGCTGGACGTGCTGGGCGTGGCGAGAAAAAAGGCGAAGTCTATTTACAGACTCTACGTCCAGATCATC
CTTTGCTGAATACCCTGCTGGAATCTGGCTATCGTAGCTTTGCCAAGCAAACGTTGAAAGAGCGTAAAGCTGCATGGATG
CCACCTTATCGCTATGCGGCTTTATTGCGCTGTGAATCCAAAGACCAAGAACTGAACCAAAGCTTTTTACAAGAGCATGC
ACAAGCACTGCGCCAAGCCTCCGAAAACAGTATTGATATTTGGGGGCCTATTCCTGCGCCGATGGAACGTAAAGCAGGCC
GCTATCAAGCGCATATGGTATTACTGTCCAAAGATCGGGCGCGTATGCATTTTTACATTCGTCAGTGGTGGCAAAATGTC
TGGCATAACAAACCGCATGGTATGAAATTGAGCCTTGATATTGATCCACAAGAGTTAAGTTAA

Domains

Predicted by InterproScan.

DEAD/DEAH box helicase (DEAD)

(210-371)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)

Primosomal protein N C-terminal domain (PriA_C)

(642-736)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

71.819

98.784

0.709

Multiple sequence alignment