Detailed information    

insolico Bioinformatically predicted

Overview

Name   tsaP   Type   Machinery gene
Locus tag   GBN93_RS00855 Genome accession   NZ_CP045103
Coordinates   181017..182171 (-) Length   384 a.a.
NCBI ID   WP_062031776.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain AJ413     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 176017..187171
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GBN93_RS00830 (GBN93_00845) - 176367..176912 (-) 546 WP_058868685.1 glutathione peroxidase -
  GBN93_RS00835 (GBN93_00850) - 177036..177590 (-) 555 WP_087013940.1 hypothetical protein -
  GBN93_RS00840 (GBN93_00855) - 177926..178846 (+) 921 WP_224467734.1 DMT family transporter -
  GBN93_RS00845 (GBN93_00860) - 179246..179815 (-) 570 WP_159153410.1 L-threonylcarbamoyladenylate synthase -
  GBN93_RS00850 (GBN93_00865) dprA 179861..180994 (-) 1134 WP_234965134.1 DNA-processing protein DprA Machinery gene
  GBN93_RS00855 (GBN93_00870) tsaP 181017..182171 (-) 1155 WP_062031776.1 LysM peptidoglycan-binding domain-containing protein Machinery gene
  GBN93_RS00860 (GBN93_00875) def 182292..182825 (+) 534 WP_004684452.1 peptide deformylase -
  GBN93_RS00865 (GBN93_00880) - 182915..183352 (+) 438 WP_159153407.1 DUF2946 family protein -
  GBN93_RS00870 (GBN93_00885) - 183425..185446 (+) 2022 WP_234965135.1 TonB-dependent copper receptor -

Sequence

Protein


Download         Length: 384 a.a.        Molecular weight: 42268.23 Da        Isoelectric Point: 7.8309

>NTDB_id=391934 GBN93_RS00855 WP_062031776.1 181017..182171(-) (tsaP) [Acinetobacter johnsonii strain AJ413]
MKKVFMGMPSFSALGFKQHMLALAVCVSVGAGVISTAQAAPTRNYNPPALKANAPNVYVVKKGDTLWDISKRFLNNPVRW
PEIWASNRHVKNPHWIFPGDRLLMCTHEGRPIIGKDEGDGCEGIIRRYTGGTKLQPQARVESLNNAIPVIPLEYIKNWLE
HSTILSEESLEGTPYIVGAADQRVIAGKGQTVYARGQGIEVGQRYAIYREGEPYIVTDAEGKKQNLGLELTQVASAIAIR
GENDMSTLEITDSYNSEVRRGYRVLPEYDAMLPTLFYPTHAQDVTGGGQVIRVQGSIGLAAKHSVVTIDRGTVDGVQSGY
VFSVSQKGQEIRDPKTNEKLTLPTERIGNIMVFKTFDRVSYAYVLDSELPMNLGAKLSPSVVDE

Nucleotide


Download         Length: 1155 bp        

>NTDB_id=391934 GBN93_RS00855 WP_062031776.1 181017..182171(-) (tsaP) [Acinetobacter johnsonii strain AJ413]
ATGAAAAAGGTTTTTATGGGCATGCCATCTTTTAGTGCCTTGGGGTTTAAGCAACACATGTTAGCACTTGCGGTTTGCGT
AAGTGTTGGCGCAGGCGTCATTTCAACAGCTCAAGCGGCGCCTACACGAAATTACAATCCACCTGCTTTAAAAGCCAATG
CACCGAATGTTTATGTGGTGAAAAAAGGCGATACCCTGTGGGATATTTCTAAACGTTTCCTAAACAATCCTGTGCGTTGG
CCTGAAATTTGGGCCAGCAATAGACACGTCAAAAATCCGCATTGGATTTTCCCAGGCGACCGTTTACTGATGTGTACTCA
TGAAGGCCGTCCAATTATTGGTAAAGATGAAGGTGATGGCTGTGAAGGGATTATTCGTCGTTATACAGGCGGCACTAAAC
TTCAACCTCAAGCACGCGTTGAGTCTTTAAACAATGCCATTCCTGTCATTCCACTGGAATACATTAAAAACTGGCTTGAA
CACAGCACTATTCTTTCAGAGGAATCTTTGGAAGGTACACCGTATATCGTTGGTGCTGCCGATCAGCGTGTGATTGCAGG
TAAAGGTCAAACCGTTTATGCACGTGGCCAAGGCATTGAAGTCGGTCAACGCTACGCGATTTACCGTGAAGGCGAACCGT
ACATTGTGACGGATGCAGAGGGCAAAAAACAAAATCTAGGTCTAGAATTGACTCAGGTTGCTTCAGCCATTGCCATTCGT
GGTGAAAATGACATGTCCACTTTAGAAATCACAGATTCGTATAATTCTGAAGTACGTCGTGGTTATCGCGTACTGCCTGA
ATACGACGCCATGCTTCCAACCTTGTTCTACCCAACACATGCACAAGATGTGACTGGGGGTGGACAAGTGATTCGTGTTC
AAGGTTCGATTGGTCTAGCTGCGAAGCATTCAGTTGTAACCATTGACCGTGGCACAGTGGATGGCGTTCAATCGGGTTAT
GTGTTCTCGGTTAGTCAAAAAGGTCAAGAAATTCGTGATCCGAAAACCAATGAAAAACTGACCCTTCCAACGGAGCGGAT
CGGCAACATCATGGTCTTTAAAACCTTTGACCGTGTCAGCTATGCTTATGTGCTCGACAGCGAACTACCAATGAACTTGG
GCGCGAAACTTTCTCCCTCTGTAGTGGATGAATAA

Domains

Predicted by InterproScan.

LysM domain (LysM)

(58-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tsaP Acinetobacter baumannii D1279779

66.234

100

0.664

Multiple sequence alignment