Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   GBN68_RS01645 Genome accession   NZ_CP045101
Coordinates   356928..359150 (-) Length   740 a.a.
NCBI ID   WP_234955155.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain AJ210     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 351928..364150
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GBN68_RS01620 (GBN68_01620) - 351962..352318 (-) 357 WP_234955146.1 chaperone modulator CbpM -
  GBN68_RS01625 (GBN68_01625) - 352329..353282 (-) 954 WP_234955148.1 DnaJ C-terminal domain-containing protein -
  GBN68_RS01630 (GBN68_01630) - 353426..353878 (-) 453 WP_234955150.1 DUF2147 domain-containing protein -
  GBN68_RS01635 (GBN68_01635) - 354078..354953 (-) 876 WP_104221757.1 Hsp33 family molecular chaperone HslO -
  GBN68_RS01640 (GBN68_01640) - 355004..356845 (-) 1842 WP_234955152.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  GBN68_RS01645 (GBN68_01645) priA 356928..359150 (-) 2223 WP_234955155.1 primosomal protein N' Machinery gene
  GBN68_RS01650 (GBN68_01650) gspF 359303..360508 (+) 1206 WP_234955165.1 type II secretion system inner membrane protein GspF -
  GBN68_RS01655 (GBN68_01655) gspG 360542..360979 (+) 438 WP_125274170.1 type II secretion system major pseudopilin GspG -
  GBN68_RS01660 (GBN68_01660) - 361263..361598 (+) 336 WP_183174634.1 hypothetical protein -
  GBN68_RS01665 (GBN68_01665) - 361676..362608 (+) 933 WP_125274168.1 IS5-like element ISAjo1 family transposase -
  GBN68_RS01670 (GBN68_01670) - 362807..363142 (+) 336 WP_234955167.1 tRNA-binding protein -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 84218.19 Da        Isoelectric Point: 8.8787

>NTDB_id=391901 GBN68_RS01645 WP_234955155.1 356928..359150(-) (priA) [Acinetobacter johnsonii strain AJ210]
MPENTLSTTPSYRIRVAVPVYLYDCFDYSLTAEQYHQAEVGARVAVSFGRQNVVGVIVEKLTDEKPLDLGFKLKAITELL
DDSAILDAKVLSLLTWSAQYYQFPIGEVMHAALPSFLRQGKPYNLLARMWKLIDDHAEEKLKRSEKQQDAYKILKLHPTG
TSENILNLAGIETATLKALEKKKIAQCILEAQDFKPQAMTLAQMPLTPNDEQKRAIQNILKARHSYHAFLLDGLTGSGKT
EVYLQVMQEVLKQGKQVLVLVPEIGLTPQTVSRFQSRFHCHIALLHSGLNDSKRLQAWQSAQTGKASIVIGTRSAIYTPL
PHLGLIVLDEEHDLSFKQQEGFRYHARDVALYRAHLENCPIILGSATPSIDSYALVEQGKMTRLELDQRAGVAVMPKMHV
IDLKVAQKQNGISQQLIHEVQKRLDKKEQVLIFLNRRGYAPVLICESCGWQAKCPHCDANFTVHRQPYQHLHCHHCGTIH
RMPEHCPQCQHSELKPIGLGTAKVEENLQELFPNFEVIRVDRDSTSRVGSWQKIYNKIQKSEPIILLGTQMLAKGHHFPY
VTLVAILDIDSGLLSVDFRATERTAQLIIQVAGRAGRGEKKGEVYLQTLRPDHPLLNTLLESGYRSFAKQTLKERKAAWM
PPYRYAALLRCESKDQELNQSFLQEHVQVLRQASENSIDIWGPIPAPMERKAGRYQAHMVLLSKDRARMHFYIRQWWQNV
WHNKPHGMKLSLDIDPQELS

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=391901 GBN68_RS01645 WP_234955155.1 356928..359150(-) (priA) [Acinetobacter johnsonii strain AJ210]
ATGCCAGAAAATACACTTTCAACCACACCAAGCTACCGTATTCGTGTGGCTGTTCCCGTTTATCTATATGACTGTTTTGA
CTATAGTTTAACGGCTGAACAATACCACCAAGCTGAAGTGGGTGCACGTGTGGCTGTCTCATTTGGTCGCCAAAATGTGG
TCGGTGTCATTGTTGAGAAACTCACTGATGAGAAACCACTCGATTTAGGCTTTAAACTTAAAGCCATAACTGAGTTGCTC
GATGACAGCGCTATTCTAGATGCTAAAGTTTTAAGTTTATTGACATGGTCAGCGCAATATTACCAATTTCCCATTGGTGA
AGTGATGCATGCTGCTTTGCCTAGCTTTTTACGCCAAGGCAAACCTTATAATTTACTGGCGCGGATGTGGAAGCTGATCG
ATGATCATGCCGAAGAAAAATTGAAGCGTTCTGAAAAACAACAAGATGCCTATAAAATTTTAAAGCTGCATCCCACTGGA
ACGTCTGAAAACATTCTAAATTTGGCTGGCATTGAAACTGCGACCTTAAAAGCCTTAGAAAAAAAGAAAATCGCCCAGTG
CATACTTGAAGCCCAAGACTTTAAACCGCAAGCCATGACACTGGCGCAAATGCCCCTCACGCCCAATGATGAACAAAAGC
GTGCCATTCAAAACATTCTCAAAGCTCGTCATAGCTACCATGCTTTCTTACTGGATGGTTTAACCGGTAGTGGGAAAACT
GAAGTCTATTTGCAAGTCATGCAAGAGGTTTTAAAACAAGGCAAACAAGTCTTGGTATTAGTGCCTGAAATTGGTCTCAC
CCCACAAACAGTGAGCCGTTTTCAGTCACGTTTTCACTGTCATATTGCGCTACTACATTCAGGTTTAAATGATTCTAAGC
GCCTTCAAGCATGGCAAAGCGCACAAACGGGCAAAGCCTCGATTGTGATTGGCACACGTTCTGCCATCTATACCCCCCTT
CCGCATTTGGGTTTGATTGTCTTAGATGAAGAGCATGACTTATCTTTCAAGCAACAAGAGGGCTTCCGTTACCATGCTCG
TGATGTGGCTTTATACCGTGCACACTTAGAAAACTGTCCGATTATCCTCGGTTCTGCAACGCCAAGTATCGACAGTTATG
CACTGGTTGAACAAGGTAAAATGACCCGTTTGGAGTTGGACCAACGTGCAGGTGTGGCCGTGATGCCGAAAATGCATGTG
ATCGATCTGAAAGTAGCACAAAAACAAAATGGCATCAGCCAACAGCTGATTCATGAAGTACAAAAGCGCTTAGACAAAAA
AGAACAGGTGCTGATTTTCTTAAATCGTCGTGGCTATGCGCCTGTGTTGATTTGTGAAAGTTGTGGCTGGCAGGCCAAGT
GCCCCCACTGCGATGCCAATTTTACCGTACATCGACAGCCCTACCAGCATTTGCACTGTCACCACTGCGGCACCATTCAC
CGCATGCCTGAACACTGCCCGCAATGTCAGCATAGCGAACTAAAACCAATTGGTTTAGGCACCGCAAAAGTTGAAGAAAA
CCTACAAGAACTGTTCCCCAACTTTGAAGTAATTCGGGTGGATCGTGACTCGACCAGTCGAGTCGGCAGCTGGCAAAAAA
TCTATAACAAAATTCAGAAAAGTGAACCCATCATTTTGCTCGGCACCCAAATGCTGGCCAAAGGACATCACTTTCCTTAT
GTGACTTTGGTGGCAATTTTAGACATCGACTCGGGCTTACTCAGTGTAGACTTTCGTGCCACAGAACGTACCGCACAACT
CATCATCCAAGTCGCGGGACGTGCAGGGCGCGGCGAGAAAAAAGGCGAGGTCTATTTACAAACTTTACGTCCAGACCACC
CTTTGCTGAATACCCTGTTGGAGTCGGGCTATCGCAGCTTTGCCAAGCAAACGTTGAAAGAGCGTAAAGCTGCATGGATG
CCACCTTATCGCTATGCGGCTTTATTGCGCTGTGAATCCAAAGACCAAGAACTGAACCAAAGCTTTTTACAAGAGCATGT
ACAAGTACTGCGCCAAGCCTCAGAAAACAGTATTGATATTTGGGGGCCCATTCCTGCGCCGATGGAACGTAAAGCAGGCC
GCTATCAAGCGCATATGGTATTACTGTCCAAAGATCGGGCGCGGATGCATTTTTACATTCGTCAGTGGTGGCAAAATGTC
TGGCATAACAAACCGCATGGCATGAAATTGAGCCTTGATATTGATCCACAAGAGTTAAGTTAA

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(642-736)

DEAD/DEAH box helicase (DEAD)

(210-371)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

71.819

98.784

0.709

Multiple sequence alignment