Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   F9230_RS15415 Genome accession   NZ_CP045099
Coordinates   3212661..3214883 (+) Length   740 a.a.
NCBI ID   WP_234950777.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain AJ14     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3207661..3219883
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F9230_RS15390 (F9230_15440) lnt 3208088..3209647 (+) 1560 WP_234950775.1 apolipoprotein N-acyltransferase -
  F9230_RS15395 (F9230_15445) - 3209714..3210052 (-) 339 WP_004692646.1 tRNA-binding protein -
  F9230_RS15400 (F9230_15450) - 3210213..3210548 (-) 336 WP_234950776.1 hypothetical protein -
  F9230_RS15405 (F9230_15455) gspG 3210832..3211269 (-) 438 WP_078425780.1 type II secretion system major pseudopilin GspG -
  F9230_RS15410 (F9230_15460) gspF 3211303..3212508 (-) 1206 WP_004692652.1 type II secretion system inner membrane protein GspF -
  F9230_RS15415 (F9230_15465) priA 3212661..3214883 (+) 2223 WP_234950777.1 primosomal protein N' Machinery gene
  F9230_RS15420 (F9230_15470) - 3214966..3216807 (+) 1842 WP_234950778.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  F9230_RS15425 (F9230_15475) - 3216858..3217733 (+) 876 WP_168159341.1 Hsp33 family molecular chaperone HslO -
  F9230_RS15430 (F9230_15480) - 3217934..3218386 (+) 453 WP_234950779.1 DUF2147 domain-containing protein -
  F9230_RS15435 (F9230_15485) - 3218532..3219485 (+) 954 WP_234950780.1 DnaJ C-terminal domain-containing protein -
  F9230_RS15440 (F9230_15490) - 3219496..3219852 (+) 357 WP_004978810.1 chaperone modulator CbpM -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 84150.03 Da        Isoelectric Point: 8.8797

>NTDB_id=391876 F9230_RS15415 WP_234950777.1 3212661..3214883(+) (priA) [Acinetobacter johnsonii strain AJ14]
MPENTLSTTPSYRIRVAVPVYLYDCFDYSLTAEQYHQAEVGARVAVSFGRQNVVGVIVEKLTDEKPLDLGFKLKAITELL
DDNAILDTKVLSLLTWSAQYYQFPIGEVMHAALPSFLRQGKPYNLLARMWKLIDDHAEDKLKRSEKQQDAYKILKLHPTG
TSENILNLAGIETATLKALEKKQITQCILEAQDFKPQAMTLAQMPLTPNDEQKRAIQNILKARHSYHAFLLDGLTGSGKT
EVYLQVMQEVLKQGKQVLVLVPEIGLTPQTVSRFQSRFHCHIALLHSGLNDSKRLQAWQSAQTGKASIVIGTRSAIYTPL
PHLGLIVLDEEHDLSFKQQEGFRYHARDVALYRAHLENCPIILGSATPSIDSYALVEQGKMTRLELDQRAGVAVMPKMHV
IDLKVAQKQNGISQQLIHEVQKRLDKKEQVLIFLNRRGYAPVLICESCGWQAKCPHCDANFTVHRQPYQHLHCHHCGTIH
RMPEHCPQCQHSELKPIGLGTAKVEENLQALFPNFDVIRVDRDSTSRVGSWQKIYNKIQKSEPIILLGTQMLAKGHHFPY
VTLVAILDIDSGLLSVDFRATERTAQLIIQVAGRAGRGEKKGEVYLQTLRPDHPLLNTLLESGYRSFAKQTLKERKAAWM
PPYRYAALLRCESKDQELNQSFLQEHAQALRQASENSIDIWGPIPAPMERKAGRYQAHMVLLSKDRARMHFYIRQWWQTV
WHNKPHGMKLSLDIDPQELS

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=391876 F9230_RS15415 WP_234950777.1 3212661..3214883(+) (priA) [Acinetobacter johnsonii strain AJ14]
ATGCCAGAAAATACACTTTCCACCACACCAAGCTACCGTATCCGCGTGGCTGTTCCCGTTTATCTATATGACTGTTTTGA
CTATAGTTTAACGGCTGAACAATACCACCAAGCTGAAGTGGGTGCACGTGTGGCTGTCTCATTTGGTCGCCAAAATGTGG
TCGGTGTCATTGTTGAGAAGCTCACTGATGAGAAACCACTCGATTTAGGCTTTAAACTTAAAGCCATAACTGAGTTGCTC
GATGACAACGCTATTCTAGATACTAAAGTTTTAAGTTTATTGACATGGTCAGCGCAATATTACCAATTTCCCATTGGTGA
AGTGATGCACGCTGCTTTGCCCAGCTTTTTACGCCAAGGCAAACCTTATAACCTACTGGCGCGGATGTGGAAGCTGATTG
ATGATCATGCCGAAGACAAATTAAAACGTTCAGAAAAACAACAAGATGCCTATAAAATTCTAAAGCTTCATCCCACCGGA
ACGTCTGAAAATATTTTAAATTTGGCTGGCATTGAAACTGCGACCTTAAAGGCCTTAGAAAAAAAGCAAATCACCCAGTG
CATACTTGAAGCTCAAGACTTTAAACCACAAGCGATGACGCTAGCGCAAATGCCTCTCACGCCCAATGATGAACAAAAGC
GTGCCATTCAAAACATTCTCAAGGCTCGTCATAGCTACCACGCTTTCTTACTGGATGGTTTAACGGGTAGTGGGAAAACT
GAAGTCTATTTGCAAGTCATGCAAGAGGTTTTAAAACAAGGCAAACAAGTTTTGGTATTAGTGCCTGAAATTGGCCTCAC
CCCACAAACAGTGAGTCGTTTTCAGTCACGTTTTCACTGTCATATTGCGCTACTACATTCAGGTTTAAATGATTCTAAGC
GCCTGCAAGCCTGGCAAAGCGCACAAACGGGCAAAGCTTCGATTGTGATTGGCACACGTTCTGCCATCTATACACCCCTT
CCGCATTTGGGTTTGATTGTCTTAGATGAAGAGCATGACTTATCTTTCAAGCAACAAGAAGGCTTTCGCTACCATGCTCG
TGATGTGGCTTTATACCGTGCACACTTAGAAAACTGTCCGATTATCCTCGGTTCTGCAACGCCAAGTATCGACAGTTATG
CATTGGTTGAACAAGGTAAAATGACCCGTTTGGAGTTGGACCAACGTGCAGGTGTGGCCGTGATGCCGAAAATGCATGTG
ATCGATCTGAAAGTGGCACAGAAACAAAATGGCATCAGCCAACAGCTGATTCATGAAGTACAAAAGCGCTTAGACAAAAA
AGAACAGGTGCTGATTTTCTTAAACCGTCGCGGCTATGCGCCTGTGTTGATTTGTGAAAGTTGTGGCTGGCAGGCGAAGT
GCCCACATTGCGATGCCAATTTTACCGTGCATCGACAGCCCTACCAGCATTTGCACTGTCACCACTGCGGTACCATCCAC
CGCATGCCTGAACACTGCCCACAATGTCAGCATAGCGAACTGAAACCAATTGGTTTAGGCACCGCAAAAGTTGAAGAAAA
CCTACAAGCACTGTTCCCGAACTTTGACGTAATTCGGGTGGATCGTGACTCGACCAGTCGGGTCGGCAGCTGGCAAAAAA
TCTATAACAAGATTCAGAAAAGTGAACCGATCATTTTGCTCGGCACCCAAATGCTGGCCAAAGGACATCACTTTCCTTAT
GTGACTTTGGTGGCGATTTTAGACATCGATTCGGGCTTACTCAGTGTTGACTTTCGCGCCACAGAACGTACTGCACAGCT
CATCATCCAAGTCGCTGGACGTGCTGGGCGCGGTGAGAAAAAAGGCGAAGTCTATTTACAAACTCTACGTCCAGATCATC
CTTTGCTGAATACCCTGCTGGAATCGGGCTATCGCAGCTTTGCCAAGCAAACGTTGAAAGAGCGTAAAGCTGCATGGATG
CCACCTTATCGCTATGCGGCTTTATTGCGCTGTGAATCCAAAGACCAAGAATTGAACCAAAGCTTTTTACAAGAGCATGC
ACAAGCACTGCGCCAAGCCTCAGAAAACAGTATTGATATTTGGGGGCCCATTCCTGCGCCGATGGAACGTAAAGCAGGCC
GCTATCAAGCGCATATGGTACTACTGTCCAAAGATCGTGCGCGGATGCATTTTTACATTCGTCAGTGGTGGCAAACTGTC
TGGCACAACAAACCGCATGGTATGAAATTGAGCCTTGATATTGATCCACAAGAGTTAAGTTAA

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(642-736)

DEAD/DEAH box helicase (DEAD)

(210-371)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

71.956

98.784

0.711

Multiple sequence alignment