Detailed information    

insolico Bioinformatically predicted

Overview


Name   chpA   Type   Regulator
Locus tag   F9230_RS04640 Genome accession   NZ_CP045099
Coordinates   979414..983892 (+) Length   1492 a.a.
NCBI ID   WP_234951389.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain AJ14     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context


Location: 974414..988892
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F9230_RS04615 (F9230_04595) - 974888..975526 (-) 639 WP_087010454.1 hypothetical protein -
  F9230_RS04620 (F9230_04600) pilG 975807..976190 (+) 384 WP_004694493.1 twitching motility response regulator PilG Regulator
  F9230_RS04625 (F9230_04605) - 976218..976586 (+) 369 WP_004694491.1 response regulator -
  F9230_RS04630 (F9230_04610) - 976592..977128 (+) 537 WP_004694490.1 chemotaxis protein CheW -
  F9230_RS04635 (F9230_04615) - 977179..979251 (+) 2073 WP_004981158.1 methyl-accepting chemotaxis protein -
  F9230_RS04640 (F9230_04620) chpA 979414..983892 (+) 4479 WP_234951389.1 Hpt domain-containing protein Regulator
  F9230_RS04645 (F9230_04625) - 983897..984352 (+) 456 WP_114837795.1 hypothetical protein -
  F9230_RS04650 (F9230_04630) dapE 984418..985551 (-) 1134 WP_234951390.1 succinyl-diaminopimelate desuccinylase -
  F9230_RS04655 (F9230_04635) - 985673..985813 (-) 141 WP_087010462.1 entericidin A/B family lipoprotein -
  F9230_RS04660 (F9230_04640) - 985971..986849 (-) 879 WP_234951391.1 DUF1853 family protein -
  F9230_RS04665 (F9230_04645) - 986947..987339 (+) 393 WP_148826485.1 YbaN family protein -
  F9230_RS04670 (F9230_04650) elsL 987339..987842 (+) 504 WP_234951392.1 cell wall-recycling L,D-carboxypeptidase ElsL -

Sequence


Protein


Download         Length: 1492 a.a.        Molecular weight: 166612.20 Da        Isoelectric Point: 4.4042

>NTDB_id=391862 F9230_RS04640 WP_234951389.1 979414..983892(+) (chpA) [Acinetobacter johnsonii strain AJ14]
MKEILKHLVETTTLPEDSYLDQDAEILEIFVEEIEEIFVELDPLFEKWYAEPTHQETLLSIRRHFHTLKGSGRMVGAKSA
GETAWAVEDTLNRVISGAVPLTATVQKFAKTVFKLFQFKLYPIFKAVQKIDLDLRPLVLIGQQLQQNQSLEPALEDLLQL
SNHLNSDNDATGLELSDIEVAESEPQVAAASEQDNQVHDVLEETLAIFIEEAEDHLATIDHFLNADETKVQDYNGLIRAL
HTLRGSSSMAQIEHVFNASSKVENLFKTLVQEEIVSTSKEISLLTQYAEFVRDYLHVLGRGTNEQLDVIYATFTTAWDNY
GFSIEDVADELNPQGMVSKLIELNIDLLLDAEFEFDQRAKVEYPDYIQHLGEQAKQLLEFTNNRAAQGIHDFTSELYAGY
QALLEKPELLNVDYAYELFGQAHQEFIHLFDTLAAGQRVILTEDVHKVLNELMAFVQQDVDSTSTTAIEPVAEAVISGNT
LQPSLDLAQISQQIASDHQYKQSNTANTDFDDDLLDIFLEEAEELLMGMDQDLNTWSKNSNDTAALNNLMRYLHTLKGGA
NMISAPFIGSIAHELESIYERVIRQQIATTPQLISIIRLVQDDVTDRIQVIRTEKVDYPATATINVLHNIQSLVEGTTVT
TTVSEPLVEAVVAAIEETQPLVQEPLSNVDRIIEVEITAVESATAIEEPSVVDNTDVTVVEQLDTPSLVQEEAASLLSIV
EETFLEEAEEILATTDGLLKQWTEQRSDRSVLLQLQRAAHSLKGGARMAENEPVGAIAYELETTFEQFAVHNFSSNVYDP
LLQTAFEWLKQAIFKRDFSNYDGLKNSLASIDYVDVIAQLPTRVTQIDLLNAVPSFEFVQGDGTEPPAMLGEWKETTHLD
GGNEMIRISADLVEKMIDLSGENAINRSRIEMDLGQLGNTLNEMELAIKRLADQLRRMEGELESQIIAKHGSENSRYADF
DPLEMDQYSSLNQLSKSLAESASDLVDFKSTLAEKIRDAEGLLLQQSRIQAEIQESLMRTRLVPFSRMLPRLQRIVRQTA
STLNRPTELVVHNTEGELDRTILERLVTPFEHMLRNAIDHGIEDAEQRGAAKKSATGQIELNISRQGTDVIVSFKDDGKG
IDESTIKAKALNLGLIKADQVLDKQEILQFIFHPGFSTAKEVTQISGRGVGLDVVQSEIKALGGHVTVESEVGFGTTFII
RVPTTVAVSDALMVKAGDQQYAIPLAQIDRIVRIAPTALDHYFHSKDDQFKIDGVSYKLRYLSEFLSNQPIPRLSNIGHS
LPVLLIKGNSGQTIALLVDQLIGSRAQIVVKPVGQQFASIGAIAGATILGDGHVCLILDGQNIARQILSTKRVTHAADHR
DFGRHQDMRRLVMIVDDSVTVRKVTSRLLERQGFDIVTAKDGVDAMEQLESVKPDLMLLDIEMPRMDGFEVTNLVRHHEI
HQNLPIIMITSRTGEKHRERAFSLGVTHYMGKPFQEAELLANIQQLLAENQG

Nucleotide


Download         Length: 4479 bp        

>NTDB_id=391862 F9230_RS04640 WP_234951389.1 979414..983892(+) (chpA) [Acinetobacter johnsonii strain AJ14]
ATGAAAGAAATATTAAAACATTTAGTTGAAACGACAACGCTTCCGGAAGATAGTTATCTAGATCAAGATGCAGAAATTCT
TGAAATTTTTGTTGAAGAAATTGAAGAAATCTTCGTTGAGTTAGATCCATTATTTGAAAAGTGGTACGCTGAACCGACAC
ATCAAGAAACCTTGTTGAGCATACGTCGTCACTTCCATACCTTAAAAGGTTCTGGTCGTATGGTAGGGGCAAAGTCAGCA
GGTGAAACGGCGTGGGCAGTTGAAGACACCTTAAACCGTGTGATTTCAGGGGCTGTACCGCTTACAGCAACGGTTCAAAA
ATTTGCTAAAACAGTATTCAAACTGTTTCAATTTAAACTGTATCCGATATTCAAAGCGGTACAGAAGATTGATCTTGACC
TTCGACCACTGGTTTTAATTGGACAACAATTACAACAAAATCAAAGTTTAGAACCTGCACTAGAAGATTTGCTACAACTG
TCTAATCATCTAAATAGTGATAATGATGCTACAGGATTAGAGCTGAGTGATATTGAAGTGGCTGAATCTGAGCCACAAGT
TGCAGCTGCTTCTGAGCAGGATAATCAAGTGCATGATGTCCTTGAAGAAACTTTAGCGATCTTCATTGAAGAAGCGGAAG
ACCATTTAGCGACTATCGACCACTTCTTAAATGCAGATGAAACCAAAGTACAAGATTACAATGGTTTAATCCGTGCTTTA
CATACATTGCGCGGTAGTTCTTCTATGGCGCAAATTGAACATGTTTTTAATGCCAGCTCAAAAGTCGAAAATCTATTTAA
AACCTTGGTTCAAGAAGAGATCGTTTCTACCTCGAAGGAAATCTCTTTACTCACCCAATATGCTGAATTTGTACGTGACT
ATTTACACGTGCTTGGGCGTGGTACGAACGAACAGCTTGACGTGATTTACGCCACGTTCACTACGGCTTGGGATAACTAT
GGTTTCAGTATTGAAGACGTAGCTGATGAGCTAAACCCACAAGGTATGGTCTCGAAGCTGATCGAGTTAAATATTGATCT
GTTGCTTGATGCCGAGTTTGAGTTTGATCAGCGTGCTAAGGTTGAATATCCAGACTATATTCAGCACTTAGGTGAACAAG
CAAAACAATTGCTAGAATTCACCAATAACCGTGCTGCTCAAGGAATTCATGACTTTACTTCTGAGCTATATGCGGGTTAT
CAAGCCTTACTGGAAAAGCCAGAATTACTTAATGTAGACTATGCATATGAGTTATTTGGTCAGGCACATCAAGAATTTAT
CCATTTATTTGATACTTTAGCAGCTGGTCAGCGCGTCATTCTGACTGAAGATGTACATAAAGTTCTGAATGAATTAATGG
CCTTTGTACAGCAAGATGTTGATTCGACTTCGACGACGGCAATTGAACCTGTTGCTGAGGCTGTTATTTCTGGAAATACT
TTACAACCAAGCCTTGATCTTGCACAGATTTCGCAGCAAATTGCATCGGATCATCAGTACAAGCAATCGAATACAGCCAA
TACCGATTTTGATGATGATTTGCTTGATATCTTCTTGGAAGAAGCTGAAGAATTATTGATGGGGATGGATCAGGATCTTA
ATACTTGGTCTAAAAATAGCAATGATACCGCGGCACTCAATAATTTAATGCGTTATTTGCACACCTTAAAAGGTGGTGCC
AATATGATTTCTGCACCTTTTATTGGTTCGATTGCACACGAATTAGAGTCTATTTATGAGCGTGTGATTCGTCAGCAAAT
AGCCACAACGCCACAGTTGATCAGCATCATTCGCTTAGTACAGGATGACGTCACAGACCGAATTCAGGTCATTCGTACCG
AGAAGGTTGATTATCCAGCAACAGCGACGATCAATGTACTGCATAACATTCAGAGCTTAGTTGAGGGTACGACTGTTACA
ACTACAGTATCTGAGCCTTTGGTTGAGGCGGTTGTCGCAGCAATTGAAGAGACTCAACCTCTAGTTCAAGAACCTTTATC
TAATGTAGACAGAATAATTGAAGTTGAAATAACTGCTGTTGAGTCAGCAACTGCGATTGAAGAGCCGAGTGTAGTTGATA
ACACTGACGTTACTGTCGTTGAACAGCTGGATACTCCGTCACTTGTCCAAGAAGAAGCAGCTAGTCTTTTATCAATTGTT
GAAGAAACCTTCTTGGAAGAAGCTGAAGAAATTTTAGCGACTACGGATGGCTTACTGAAACAGTGGACTGAACAACGTAG
TGACCGTAGTGTGTTACTACAATTGCAACGTGCCGCGCACAGCTTAAAAGGCGGCGCGCGTATGGCGGAGAATGAACCCG
TTGGTGCGATTGCTTATGAACTAGAAACCACATTTGAGCAATTTGCTGTACATAATTTCAGTTCAAACGTGTATGACCCA
TTATTGCAAACCGCATTTGAATGGTTAAAACAAGCCATCTTCAAGCGTGATTTTAGTAATTATGATGGTTTGAAAAACAG
CTTAGCATCTATTGATTATGTGGATGTGATTGCGCAATTACCGACGCGTGTAACTCAAATTGATTTACTCAATGCGGTAC
CAAGTTTTGAGTTTGTGCAGGGTGATGGTACTGAGCCGCCAGCAATGCTGGGTGAGTGGAAAGAAACGACTCACTTGGAT
GGTGGTAATGAAATGATTCGTATCTCAGCTGATTTGGTTGAGAAAATGATCGACCTGTCCGGTGAAAATGCAATTAACCG
TTCGCGTATCGAGATGGACTTAGGTCAGCTCGGCAATACGTTGAACGAGATGGAGCTTGCAATTAAGCGTTTGGCAGATC
AGTTACGTCGAATGGAAGGTGAGCTTGAGAGTCAAATTATTGCGAAGCACGGTTCTGAAAACTCGCGCTACGCAGACTTT
GACCCTTTGGAAATGGACCAATATTCATCGTTGAATCAATTGTCCAAATCCTTAGCCGAATCAGCTTCGGATTTGGTCGA
TTTTAAGAGCACTTTGGCTGAGAAAATTCGTGATGCGGAAGGCTTGTTATTACAACAATCCCGTATTCAAGCGGAGATTC
AAGAAAGCTTAATGCGGACACGTTTGGTACCGTTCTCACGTATGCTGCCGCGTTTGCAACGTATTGTACGTCAGACCGCC
TCAACTTTGAACCGTCCAACGGAATTGGTCGTCCATAACACCGAAGGTGAATTAGACCGTACGATTCTTGAACGTTTGGT
TACGCCGTTTGAGCATATGCTACGTAACGCAATCGACCACGGTATTGAAGATGCAGAACAACGTGGCGCTGCGAAAAAAT
CAGCGACAGGCCAAATTGAACTGAACATTAGTCGTCAAGGTACAGATGTTATCGTCAGTTTTAAAGATGATGGTAAGGGT
ATTGATGAAAGCACGATTAAAGCGAAAGCGCTAAACTTAGGTTTAATTAAAGCCGATCAAGTGCTAGATAAACAGGAAAT
CTTACAGTTTATTTTCCATCCGGGTTTCAGTACAGCCAAAGAAGTGACGCAAATTTCTGGACGTGGTGTTGGTCTTGATG
TGGTGCAAAGTGAAATTAAAGCACTGGGTGGACATGTCACGGTTGAATCGGAAGTTGGATTCGGCACGACCTTCATTATT
CGCGTACCGACTACGGTAGCGGTGAGTGATGCCTTGATGGTGAAAGCAGGCGATCAACAATATGCGATTCCATTGGCGCA
GATTGATCGTATTGTGCGTATTGCTCCAACAGCATTGGATCACTATTTCCACAGCAAAGATGACCAATTCAAAATTGATG
GTGTGAGTTATAAACTGCGCTATTTATCTGAGTTTTTATCCAATCAGCCGATTCCGCGTTTGAGTAATATTGGACATTCA
TTGCCGGTGTTATTGATTAAAGGCAATAGTGGACAAACCATTGCCTTATTGGTTGATCAGCTGATTGGTTCACGTGCGCA
AATTGTAGTGAAGCCCGTTGGACAACAGTTTGCCAGCATTGGTGCAATTGCGGGTGCAACGATTTTGGGTGATGGTCATG
TCTGCTTGATTTTAGATGGTCAGAACATCGCACGTCAGATTTTAAGTACCAAGCGTGTAACGCATGCAGCCGATCACCGT
GACTTTGGTCGTCATCAGGATATGCGTCGTTTAGTGATGATTGTGGATGACTCGGTCACGGTTCGTAAGGTCACATCGCG
CTTATTAGAGCGCCAAGGCTTTGATATTGTGACTGCTAAAGACGGTGTCGATGCGATGGAGCAGTTGGAGAGCGTTAAAC
CAGACTTGATGTTGCTGGATATTGAAATGCCACGTATGGATGGTTTCGAAGTAACGAACTTGGTTCGTCACCATGAAATT
CACCAGAACTTGCCGATTATTATGATTACATCGCGTACGGGTGAAAAACACCGTGAACGTGCTTTCAGCTTGGGCGTGAC
ACACTACATGGGCAAACCATTCCAAGAGGCAGAATTACTTGCCAACATTCAGCAGCTATTGGCTGAAAATCAGGGGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  chpA Acinetobacter baumannii strain A118

60.752

100

0.617


Multiple sequence alignment