Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   F9230_RS02080 Genome accession   NZ_CP045099
Coordinates   439775..440632 (+) Length   285 a.a.
NCBI ID   WP_234951844.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain AJ14     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 434775..445632
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F9230_RS02055 (F9230_02065) - 435387..435761 (-) 375 WP_234951105.1 hypothetical protein -
  F9230_RS02060 (F9230_02070) - 435974..437026 (-) 1053 WP_234951106.1 sensor domain-containing diguanylate cyclase -
  F9230_RS02065 (F9230_02075) - 437304..437879 (-) 576 WP_004691243.1 xanthine phosphoribosyltransferase -
  F9230_RS02070 (F9230_02080) - 437970..438680 (-) 711 WP_234951107.1 DUF3108 domain-containing protein -
  F9230_RS02075 (F9230_02085) - 438836..439513 (-) 678 WP_004977854.1 hypothetical protein -
  F9230_RS02080 (F9230_02090) tonB2 439775..440632 (+) 858 WP_234951844.1 energy transducer TonB Machinery gene
  F9230_RS02085 (F9230_02095) - 440922..443066 (+) 2145 WP_234951108.1 TonB-dependent siderophore receptor -
  F9230_RS02090 (F9230_02100) - 443236..443646 (-) 411 WP_234951109.1 hypothetical protein -
  F9230_RS02095 (F9230_02105) ybeY 443747..444226 (-) 480 WP_234951110.1 rRNA maturation RNase YbeY -
  F9230_RS02100 (F9230_02110) - 444284..445360 (-) 1077 WP_184118867.1 PhoH family protein -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 32585.11 Da        Isoelectric Point: 6.6632

>NTDB_id=391856 F9230_RS02080 WP_234951844.1 439775..440632(+) (tonB2) [Acinetobacter johnsonii strain AJ14]
MPLAHDWWKDPIFTATVVLAVFLHLVVLTLQFAMPQENDAAVKEIAVTLRPSDKKIENADFLAQADQQGSGTFRESHRMS
SDMPAPMLEQSTGEQQRETLEQIQQKRELNFEEKLLMTTLSWQKQAEDNQRKKAMEEMNSQFQAKAAMVASLEAQYLQRQ
QNFSRQQKIKTVDGIQAKQDISAAYLEKFRQKVEFYGNRYYPEAAKQQRLAGEVRLMVILNASGGIRAIRLIDSSGHEML
DEAAKASVRKAAPFGGFDAKMKDISELRIVRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 858 bp        

>NTDB_id=391856 F9230_RS02080 WP_234951844.1 439775..440632(+) (tonB2) [Acinetobacter johnsonii strain AJ14]
ATGCCTTTGGCTCATGATTGGTGGAAAGACCCAATTTTTACAGCGACCGTTGTGCTGGCGGTGTTTTTGCATCTTGTAGT
TTTGACTTTGCAATTTGCGATGCCTCAAGAAAATGATGCGGCAGTGAAAGAAATTGCGGTTACCTTGCGTCCTTCTGATA
AAAAAATTGAAAATGCAGATTTTTTAGCGCAAGCCGATCAACAAGGTTCAGGGACCTTTCGTGAGTCACATCGCATGTCG
AGTGACATGCCCGCACCGATGCTTGAGCAAAGTACAGGTGAACAGCAGCGTGAAACTTTAGAACAGATCCAACAAAAACG
TGAGCTGAATTTTGAAGAAAAGCTGTTAATGACGACCTTAAGTTGGCAAAAACAAGCTGAGGATAACCAGCGCAAAAAAG
CCATGGAAGAAATGAACAGCCAGTTTCAAGCCAAAGCAGCAATGGTGGCCAGCCTTGAAGCGCAATATTTACAACGCCAA
CAAAACTTTAGCCGTCAGCAAAAAATTAAAACAGTCGATGGTATTCAAGCTAAGCAAGATATTTCGGCCGCCTATCTTGA
AAAGTTCCGTCAGAAAGTGGAATTTTATGGCAACCGTTACTATCCAGAAGCAGCTAAACAGCAGCGGCTGGCGGGTGAAG
TGCGTTTAATGGTGATTCTAAATGCATCAGGAGGCATCCGCGCTATTCGTCTGATTGATAGTTCAGGCCATGAGATGCTT
GATGAGGCTGCAAAAGCCTCGGTGCGTAAAGCCGCACCATTTGGTGGATTTGATGCCAAAATGAAGGATATTTCTGAGTT
ACGTATTGTGCGTACATGGCGTTTTGACCCAGCAGAGGCAGAGTTTGAAGTGCACTGA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(198-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

74.643

98.246

0.733

Multiple sequence alignment