Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   GBN63_RS08360 Genome accession   NZ_CP045098
Coordinates   1842534..1843916 (-) Length   460 a.a.
NCBI ID   WP_010296280.1    Uniprot ID   -
Organism   Pectobacterium carotovorum strain ZM1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1837534..1848916
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GBN63_RS08330 (GBN63_08340) pepP 1837693..1839036 (-) 1344 WP_239768059.1 Xaa-Pro aminopeptidase -
  GBN63_RS08335 (GBN63_08345) - 1839111..1839698 (-) 588 WP_010296270.1 YecA family protein -
  GBN63_RS08340 (GBN63_08350) zapA 1839891..1840220 (+) 330 WP_010284667.1 cell division protein ZapA -
  GBN63_RS08350 (GBN63_08360) - 1840519..1841166 (+) 648 WP_239768061.1 5-formyltetrahydrofolate cyclo-ligase -
  GBN63_RS08355 (GBN63_08365) nadR 1841163..1842416 (-) 1254 WP_239768063.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  GBN63_RS08360 (GBN63_08370) radA 1842534..1843916 (-) 1383 WP_010296280.1 DNA repair protein RadA Machinery gene
  GBN63_RS08365 (GBN63_08375) serB 1843934..1844911 (-) 978 WP_119880570.1 phosphoserine phosphatase -
  GBN63_RS08370 (GBN63_08380) - 1845055..1845753 (+) 699 WP_010296287.1 YtjB family periplasmic protein -
  GBN63_RS08375 (GBN63_08385) - 1845808..1846716 (-) 909 WP_239768065.1 hypothetical protein -
  GBN63_RS08380 (GBN63_08390) prfC 1847010..1848599 (+) 1590 WP_039507387.1 peptide chain release factor 3 -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49618.21 Da        Isoelectric Point: 7.4218

>NTDB_id=391837 GBN63_RS08360 WP_010296280.1 1842534..1843916(-) (radA) [Pectobacterium carotovorum strain ZM1]
MAKAVKRAFVCNECGADYPRWQGQCSACHAWNTITEVRLASASVSRSDRLTGYAGESAGVSRVQKLSEISLEALPRFSTG
FQEFDRVLGGGVVPGSAILIGGNPGAGKSTLLLQTLCKLSENMKTLYVTGEESLQQVAMRAHRLNLPTQNLNMLSETSIE
QICLIAEQEQPKLMVIDSIQVMHLADIQSSPGSVAQVRETAAYLTRFAKTRGVAIVMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGLREISNPSAIFLSRGDEITSGSSVMVVWEGTRPLLVEIQALVDQ
SMMANPRRVAVGLEQNRLAILLAVLHRHGGLQMSDQDVFVNVVGGVKVTETSADLALLLSLVSSFRDRPLPQDLVIFGEV
GLAGEIRPVPSGQERITEAAKHGFKRAIVPHANMPKKVPASMQVFGVKKLADALAILDDL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=391837 GBN63_RS08360 WP_010296280.1 1842534..1843916(-) (radA) [Pectobacterium carotovorum strain ZM1]
GTGGCAAAAGCCGTCAAACGGGCGTTTGTATGTAATGAATGCGGGGCTGACTACCCTCGCTGGCAAGGGCAGTGCAGCGC
CTGCCATGCCTGGAATACCATTACCGAAGTCCGTCTGGCCTCGGCGTCGGTGTCACGTTCCGACCGTCTCACTGGCTATG
CGGGTGAAAGCGCTGGCGTCAGCCGGGTACAAAAGCTCTCGGAAATTAGTCTTGAAGCCCTGCCACGCTTTTCTACCGGC
TTTCAGGAGTTTGACCGCGTTCTGGGCGGCGGTGTCGTTCCGGGCAGTGCCATTCTGATCGGCGGTAACCCCGGTGCAGG
TAAAAGTACCCTGCTGCTGCAAACGCTCTGCAAGCTGTCAGAGAACATGAAAACCCTGTACGTCACCGGTGAAGAATCAC
TACAGCAGGTAGCAATGCGGGCGCATCGTCTCAATCTGCCAACGCAGAATCTCAATATGCTGTCAGAAACCAGCATCGAA
CAGATTTGCCTGATCGCCGAGCAGGAACAGCCGAAACTGATGGTGATCGACTCCATTCAGGTCATGCATCTCGCCGATAT
TCAATCGTCTCCCGGCAGCGTGGCGCAGGTGCGTGAAACCGCCGCCTACCTGACGCGCTTCGCCAAAACGCGCGGCGTTG
CTATCGTCATGGTCGGCCACGTCACCAAAGACGGTTCGCTCGCCGGGCCGAAAGTCTTGGAACACTGCATCGACTGCTCC
GTGCTGCTGGATGGCGATGCCGATTCCCGCTTCCGCACGCTGCGCAGCCATAAAAACCGTTTCGGCGCCGTTAACGAGCT
GGGCGTGTTCGCGATGACGGAACAAGGTCTACGCGAGATCAGCAATCCGTCGGCGATTTTCCTCAGCCGCGGGGACGAAA
TCACGTCCGGCAGTTCGGTCATGGTAGTGTGGGAAGGCACACGTCCGCTGCTGGTCGAAATTCAGGCGCTGGTGGATCAG
TCGATGATGGCCAACCCGCGTCGCGTTGCAGTCGGGCTGGAGCAAAACCGATTAGCCATTCTGCTGGCGGTGCTGCATCG
ACACGGCGGCTTGCAGATGTCGGATCAGGATGTATTTGTGAATGTCGTCGGCGGCGTGAAAGTCACCGAAACCAGTGCCG
ACCTGGCGCTGCTGCTATCGCTGGTCTCCAGCTTCCGCGACCGCCCGCTGCCGCAGGATCTGGTCATCTTCGGTGAAGTC
GGTCTGGCGGGCGAAATCCGCCCGGTTCCCAGCGGACAAGAGCGGATTACCGAAGCAGCCAAACACGGTTTCAAACGTGC
CATCGTTCCTCATGCCAATATGCCGAAGAAAGTCCCTGCCAGCATGCAGGTGTTCGGCGTGAAAAAGCTGGCCGATGCGC
TGGCGATCCTCGACGATCTCTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_25)

(89-225)

Subunit ChlI of Mg-chelatase (ChlI)

(348-433)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.261

100

0.483
  radA Streptococcus pneumoniae Rx1

42.982

99.13

0.426
  radA Streptococcus pneumoniae D39

42.982

99.13

0.426
  radA Streptococcus pneumoniae R6

42.982

99.13

0.426
  radA Streptococcus pneumoniae TIGR4

42.982

99.13

0.426
  radA Streptococcus mitis NCTC 12261

42.982

99.13

0.426
  radA Streptococcus mitis SK321

42.982

99.13

0.426

Multiple sequence alignment