Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   HNO12_RS08545 Genome accession   NZ_CP053376
Coordinates   1732580..1733011 (+) Length   143 a.a.
NCBI ID   WP_003154113.1    Uniprot ID   A7Z4X3
Organism   Bacillus amyloliquefaciens strain WF02     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1727580..1738011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HNO12_RS08525 (HNO12_08545) spoVS 1728149..1728409 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  HNO12_RS08530 (HNO12_08550) tdh 1728668..1729714 (+) 1047 WP_015388219.1 L-threonine 3-dehydrogenase -
  HNO12_RS08535 (HNO12_08555) - 1729727..1730905 (+) 1179 WP_088037143.1 glycine C-acetyltransferase -
  HNO12_RS08540 (HNO12_08560) miaB 1731048..1732577 (+) 1530 WP_024085311.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  HNO12_RS08545 (HNO12_08565) ymcA 1732580..1733011 (+) 432 WP_003154113.1 RicAFT regulatory complex protein RicA family protein Regulator
  HNO12_RS08550 (HNO12_08570) cotE 1733265..1733810 (+) 546 WP_003154111.1 outer spore coat protein CotE -
  HNO12_RS08555 (HNO12_08575) hexA 1733929..1736514 (+) 2586 WP_024085312.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16082.22 Da        Isoelectric Point: 5.0213

>NTDB_id=391834 HNO12_RS08545 WP_003154113.1 1732580..1733011(+) (ymcA) [Bacillus amyloliquefaciens strain WF02]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENEKVSAIINQIKTLQKQAVNLKHYEKLEALKQVESKIDALQE
ELEGIPIIQEFRDSQIEVNDLLQLVAHTISNQVTNEIITSTGGNLLTGETGSKVKHSNNSCSI

Nucleotide


Download         Length: 432 bp        

>NTDB_id=391834 HNO12_RS08545 WP_003154113.1 1732580..1733011(+) (ymcA) [Bacillus amyloliquefaciens strain WF02]
ATGACGCTTTACTCAAAGAAAGACATTGTACAGCAGGCTAGGAACCTTGCGAAAATGATTTCTGAAACAGAAGAAGTTGA
TTTTTTCAAACGCGCCGAGGCGCAGATTAACGAAAATGAAAAAGTCTCTGCGATTATTAATCAGATTAAAACCCTGCAAA
AGCAAGCCGTTAACCTGAAGCACTACGAAAAGCTTGAAGCGCTGAAGCAAGTGGAAAGTAAAATTGACGCCCTGCAGGAA
GAGCTTGAAGGGATTCCGATCATTCAGGAATTCAGAGATTCCCAGATTGAGGTCAATGACCTTCTTCAGCTTGTCGCACA
TACGATCTCAAATCAGGTGACAAACGAAATTATTACATCTACCGGAGGCAACCTGCTGACGGGAGAAACCGGTTCAAAAG
TAAAACATTCGAATAACAGCTGTTCTATTTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z4X3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

91.608

100

0.916