Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   HNO12_RS06245 Genome accession   NZ_CP053376
Coordinates   1239178..1240314 (+) Length   378 a.a.
NCBI ID   WP_087920760.1    Uniprot ID   A7Z3N2
Organism   Bacillus amyloliquefaciens strain WF02     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Genomic Context

Location: 1234178..1245314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HNO12_RS06220 (HNO12_06235) - 1234183..1234359 (+) 177 WP_017417595.1 class II lanthipeptide, LchA2/BrtA2 family -
  HNO12_RS06225 (HNO12_06240) - 1234396..1234572 (+) 177 WP_017417596.1 class II lanthipeptide, LchA2/BrtA2 family -
  HNO12_RS06230 (HNO12_06245) - 1234661..1237546 (+) 2886 WP_003154888.1 type 2 lanthipeptide synthetase LanM family protein -
  HNO12_RS06235 (HNO12_06250) - 1237593..1238357 (-) 765 WP_003154887.1 sulfite exporter TauE/SafE family protein -
  HNO12_RS06240 (HNO12_06255) - 1238506..1238973 (-) 468 WP_003154885.1 DinB family protein -
  HNO12_RS06245 (HNO12_06260) rapC 1239178..1240314 (+) 1137 WP_087920760.1 Rap family tetratricopeptide repeat protein Regulator
  HNO12_RS06250 (HNO12_06265) - 1240304..1240438 (+) 135 WP_003154881.1 PhrA family phosphatase inhibitor -
  HNO12_RS06255 (HNO12_06270) - 1240581..1241534 (+) 954 WP_003154880.1 N-acetylmuramoyl-L-alanine amidase -
  HNO12_RS06260 (HNO12_06275) - 1241572..1241949 (-) 378 WP_003154878.1 PH domain-containing protein -
  HNO12_RS06265 (HNO12_06280) - 1242049..1242654 (+) 606 WP_003154876.1 poly-gamma-glutamate hydrolase family protein -
  HNO12_RS06270 (HNO12_06285) - 1242644..1242793 (+) 150 WP_003154875.1 hypothetical protein -
  HNO12_RS06275 (HNO12_06290) - 1242809..1243399 (-) 591 WP_003154873.1 ImmA/IrrE family metallo-endopeptidase -
  HNO12_RS06280 (HNO12_06295) xre 1243548..1243886 (-) 339 WP_003154871.1 HTH-type transcriptional regulator Xre -
  HNO12_RS06285 (HNO12_06300) - 1244078..1244257 (+) 180 WP_003154869.1 hypothetical protein -
  HNO12_RS06290 (HNO12_06305) - 1244247..1245074 (+) 828 WP_003154867.1 FaeA/PapI family transcriptional regulator -

Sequence

Protein


Download         Length: 378 a.a.        Molecular weight: 45073.28 Da        Isoelectric Point: 4.9159

>NTDB_id=391813 HNO12_RS06245 WP_087920760.1 1239178..1240314(+) (rapC) [Bacillus amyloliquefaciens strain WF02]
MRMKQTIPSSFVGLKINEWYTHIRQFHVLEAERVKREVEREIEDMEEDQDLLLYYSLMEFRHRVMLDYIKPLKEDPSQPE
FSELLEDIEGNQYKLTGLLDYYFNFFRGMYEFKQKMFLNAMMYYKRAEKNLALVSDDIEKAEFAFKMAEIFYNLKQTYVS
MSYAVQALETYQSYETYNVRRIQCEFVIAGNYDDMQYPERALPHLELALDLAKQEGNPRLISSALYNLGNCYEKMGDLSK
AAEYFETSVSICRSEKFDNLPHSIYSLTQVLYKQNTTAEAEKQYRLGLSIAREYNDELFVNLFQFLHALYGKEMDNASVR
HTFDFLEEHMLYPYVEELAHDAAKFYMKHGQPEKALTFYEKMVHAQKQIQRGDCLYEI

Nucleotide


Download         Length: 1137 bp        

>NTDB_id=391813 HNO12_RS06245 WP_087920760.1 1239178..1240314(+) (rapC) [Bacillus amyloliquefaciens strain WF02]
TTGAGGATGAAGCAGACTATTCCGTCCTCTTTTGTCGGGCTCAAAATTAATGAATGGTATACCCATATCCGGCAGTTTCA
CGTCCTTGAGGCGGAGCGCGTCAAACGTGAAGTAGAGAGAGAGATTGAGGATATGGAAGAAGATCAGGATCTGCTGCTGT
ATTATTCATTAATGGAATTCAGACACCGCGTCATGCTGGATTACATCAAGCCCTTAAAGGAGGACCCTTCTCAGCCTGAG
TTTTCAGAATTATTGGAAGACATTGAAGGCAACCAGTATAAACTGACAGGACTGCTTGATTACTACTTTAATTTTTTTCG
AGGAATGTACGAATTTAAACAGAAAATGTTCCTAAACGCCATGATGTATTACAAACGGGCTGAAAAAAACCTTGCACTCG
TTTCTGATGACATCGAGAAAGCTGAGTTTGCTTTTAAAATGGCCGAGATTTTTTACAACCTGAAACAAACCTACGTCTCC
ATGAGTTATGCCGTTCAAGCCCTTGAAACGTACCAATCGTATGAGACGTACAACGTCCGCAGAATCCAATGTGAATTCGT
TATTGCAGGGAATTATGATGACATGCAGTATCCAGAAAGAGCATTGCCCCACTTAGAACTTGCTTTAGATCTTGCAAAAC
AAGAAGGCAATCCCCGTCTTATCAGTTCAGCCTTATATAATCTCGGAAACTGTTACGAAAAAATGGGAGACCTCTCTAAA
GCAGCCGAATATTTTGAGACATCCGTTTCCATTTGCAGGTCAGAAAAGTTCGATAATCTTCCGCATTCTATTTACTCATT
AACACAGGTTCTTTATAAACAGAACACTACAGCCGAAGCAGAGAAGCAATATCGCCTCGGGCTCAGTATCGCCCGCGAAT
ACAATGATGAATTGTTTGTCAATCTGTTCCAATTTTTGCATGCGTTATACGGCAAGGAAATGGATAACGCATCCGTCAGG
CACACGTTTGATTTTCTGGAAGAACACATGCTGTATCCGTATGTGGAAGAATTGGCGCATGACGCTGCCAAATTTTACAT
GAAACACGGACAGCCTGAAAAAGCGCTCACGTTTTATGAAAAAATGGTGCACGCCCAAAAACAAATCCAGAGAGGAGATT
GTCTATATGAAATCTAA

Domains

Predicted by InterProScan.

Tetratricopeptide repeat (TPR_12)

(221-293)

response regulator aspartate phosphatase H, N terminal (RapH_N)

(6-67)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z3N2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

44.415

99.471

0.442
  rapF Bacillus subtilis subsp. subtilis str. 168

42.48

100

0.426