Detailed information NTG0391773

Bioinformatically predicted

Overview

• Name: rapF
• Type: Regulator
• Locus tag: HNO12_RS01530
• Genome accession: NZ_CP053376
• Coordinates: 308874..309995 (+)
• Length: 373 a.a.
• NCBI ID: WP_003156660.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain WF02
• Function: inhibit the DNA-binding function of ComA (predicted from homology) Competence regulation

Genomic Context

Location: 303874..314995

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HNO12_RS01510 (HNO12_01515)	-	304181..305176 (-)	996	WP_014304282.1	DUF5105 domain-containing protein	-
HNO12_RS01515 (HNO12_01520)	-	305305..306705 (+)	1401	WP_024084859.1	YcdB/YcdC domain-containing protein	-
HNO12_RS01520 (HNO12_01525)	-	306906..308264 (+)	1359	WP_024084860.1	YcdB/YcdC domain-containing protein	-
HNO12_RS01525 (HNO12_01530)	-	308261..308764 (-)	504	WP_015388738.1	M15 family metallopeptidase	-
HNO12_RS01530 (HNO12_01535)	rapF	308874..309995 (+)	1122	WP_003156660.1	tetratricopeptide repeat protein	Regulator
HNO12_RS01535 (HNO12_01540)	-	310111..310890 (+)	780	WP_015388737.1	glucose 1-dehydrogenase	-
HNO12_RS01540 (HNO12_01545)	-	310973..312652 (+)	1680	WP_024084861.1	alpha-glucosidase	-
HNO12_RS01545 (HNO12_01550)	-	312843..313802 (+)	960	WP_024084862.1	metal ABC transporter substrate-binding protein	-
HNO12_RS01550 (HNO12_01555)	-	313857..314552 (+)	696	WP_003156655.1	metal ABC transporter ATP-binding protein	-

Sequence

Protein

• Length: 373 a.a.
• Molecular weight: 44333.58 Da
• Isoelectric Point: 5.1691

>NTDB_id=391773 HNO12_RS01530 WP_003156660.1 308874..309995(+) (rapF) [Bacillus amyloliquefaciens strain WF02]
MKSKIPSEEVAVKMNEWYKLIRAFEADKAEALKREIQYELEDMEENQDLLLYFSLMEFRHRIMLDKLKPMKDGDCQPPFS
EMLTEIEMNQQKLTGLLEYYFYYFRGMYEFKQKNFISAISHYKRAEEKLEYVEDDIEKAEFLYKISEVYYHIKQTFFSMN
YAGQALDIYKKYELYGMRRVQCKFIIAGNLMDAQQHKKALEYLECALEHAERLDDQYMIAAAYYNIGHCMYSLGDFCKAA
EDFERAAAGFEAHSFRQVIQAVFSLTHIYFKTEKYSEAAASCARGMRSAAEWEDEIYMTKFRLIKELYQGEGGQDSLKEY
FDILESKELLADTEELLQDAAHFFHKRENYKAASYFFSRLVGVQKRLQMNNYA

Nucleotide

• Length: 1122 bp

>NTDB_id=391773 HNO12_RS01530 WP_003156660.1 308874..309995(+) (rapF) [Bacillus amyloliquefaciens strain WF02]
ATGAAATCCAAGATTCCATCTGAAGAAGTGGCCGTAAAGATGAATGAATGGTATAAGCTGATCCGCGCGTTTGAAGCCGA
TAAAGCTGAAGCGCTGAAGCGGGAGATTCAATATGAACTCGAAGATATGGAAGAAAATCAGGATTTATTGTTGTATTTTT
CATTGATGGAATTTAGGCACCGCATCATGCTGGATAAATTAAAACCCATGAAAGACGGCGACTGCCAGCCTCCGTTCTCT
GAAATGCTCACTGAGATTGAGATGAACCAGCAAAAGCTGACCGGCTTACTGGAATATTATTTTTACTATTTCAGAGGAAT
GTATGAATTTAAGCAGAAAAACTTCATCTCAGCGATTTCTCATTATAAGCGGGCTGAGGAAAAGCTTGAATATGTGGAAG
ATGACATAGAGAAAGCCGAGTTTCTGTATAAAATTTCTGAGGTGTACTATCATATCAAGCAGACTTTCTTTTCGATGAAT
TATGCGGGACAGGCGCTTGATATTTACAAGAAATATGAATTATACGGAATGAGAAGGGTGCAGTGCAAATTTATCATTGC
CGGAAATCTGATGGACGCCCAGCAGCATAAAAAAGCGCTGGAATACCTCGAATGCGCCTTGGAGCACGCGGAGCGGCTTG
ATGATCAATATATGATTGCTGCGGCCTATTATAATATCGGGCACTGTATGTACAGTCTGGGTGACTTTTGCAAGGCGGCG
GAGGATTTTGAACGGGCGGCTGCCGGATTTGAAGCACACAGCTTCCGGCAGGTCATCCAGGCTGTTTTTTCACTCACGCA
TATCTACTTTAAAACGGAAAAATACAGTGAAGCCGCCGCCAGCTGCGCGCGGGGCATGAGAAGTGCGGCGGAGTGGGAAG
ATGAGATCTATATGACAAAATTCCGTCTGATTAAAGAGCTTTATCAGGGGGAAGGCGGACAGGATTCGCTCAAAGAGTAT
TTTGACATCCTGGAATCAAAAGAGCTGTTGGCTGACACAGAGGAACTGCTTCAGGACGCGGCTCATTTCTTTCATAAACG
GGAGAACTACAAAGCGGCATCTTATTTTTTCAGCAGGCTTGTCGGCGTGCAAAAAAGGCTGCAAATGAACAACTACGCAT
AA

Domains

Predicted by InterProScan.

• Tetratricopeptide repeat (TPR_12) (187-251)

• response regulator aspartate phosphatase H, N terminal (RapH_N) (4-65)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rapF	Bacillus subtilis subsp. subtilis str. 168	42.588	99.464	0.424
rapC	Bacillus subtilis subsp. subtilis str. 168	40.323	99.732	0.402