Detailed information NTG0039177

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: HFELIS_RS04630
• Genome accession: NC_014810
• Coordinates: 909704..910783 (-)
• Length: 359 a.a.
• NCBI ID: WP_013469376.1
• Uniprot ID: -
• Organism: Helicobacter felis ATCC 49179
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 904704..915783

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HFELIS_RS08740 (HFELIS_09210)	lysA	904853..906775 (-)	1923	WP_013469371.1	diaminopimelate decarboxylase	-
HFELIS_RS04610 (HFELIS_09220)	-	906772..907338 (-)	567	WP_013469372.1	2-oxoacid:acceptor oxidoreductase family protein	-
HFELIS_RS04615 (HFELIS_09230)	-	907341..908168 (-)	828	WP_013469373.1	2-oxoglutarate ferredoxin oxidoreductase subunit beta	-
HFELIS_RS04620 (HFELIS_09240)	-	908168..909298 (-)	1131	WP_013469374.1	2-oxoglutarate synthase subunit alpha	-
HFELIS_RS04625 (HFELIS_09250)	-	909295..909636 (-)	342	WP_013469375.1	4Fe-4S binding protein	-
HFELIS_RS04630 (HFELIS_09260)	comB10	909704..910783 (-)	1080	WP_013469376.1	DNA type IV secretion system protein ComB10	Machinery gene
HFELIS_RS04635 (HFELIS_09270)	-	910792..911808 (-)	1017	WP_013469377.1	TrbG/VirB9 family P-type conjugative transfer protein	-
HFELIS_RS04640 (HFELIS_09280)	-	911796..912530 (-)	735	WP_013469378.1	DnaJ domain-containing protein	-
HFELIS_RS04645 (HFELIS_09290)	-	912541..912858 (-)	318	WP_041303214.1	hypothetical protein	-
HFELIS_RS04650 (HFELIS_09300)	-	912869..914368 (-)	1500	WP_013469380.1	DUF5644 domain-containing protein	-
HFELIS_RS04655 (HFELIS_09310)	-	914365..914829 (-)	465	WP_231844151.1	hypothetical protein	-

Sequence

Protein

• Length: 359 a.a.
• Molecular weight: 39793.93 Da
• Isoelectric Point: 9.5004

>NTDB_id=39177 HFELIS_RS04630 WP_013469376.1 909704..910783(-) (comB10) [Helicobacter felis ATCC 49179]
MKGAWLKKILSIIAIAIAIITISLWVHRPKTSQSPTIIEAKYPLADYHFIPPQEPPAPPPQVSSDYAELKSQLQEATARI
QQLQEELDHQMSVSENSPPPPTPQEDTQRNDLLATRIQAFKSSHAEKIQENTTEEFDNLKAKDTATHQNRLFRTITADKM
IPAFLITPISSKLAGKAIAQVESDVFASMGKTILIPKGSKVIGYYNNTDKVGEYRLDIVWTRIITPKGVNIMLTNAKGAD
IKGYSGLVGEMMTHNLQRYGLPLLVSTLSNGLLIALTSAIANKTGKNNFFGDYLLMQMTRQTGMGLNQIVAQILRDKSQL
NPVIIIREGSRVFISPNLDIFFPSAKNGEIQVEVVETTK

Nucleotide

• Length: 1080 bp

>NTDB_id=39177 HFELIS_RS04630 WP_013469376.1 909704..910783(-) (comB10) [Helicobacter felis ATCC 49179]
ATGAAAGGCGCGTGGCTTAAAAAAATCCTCTCTATTATTGCGATTGCTATAGCCATCATCACCATTTCATTGTGGGTGCA
CCGCCCTAAAACTTCTCAATCACCCACAATCATAGAAGCCAAATACCCTCTAGCAGATTACCATTTTATCCCCCCTCAAG
AACCTCCCGCTCCTCCCCCGCAAGTCTCCTCTGATTATGCAGAGCTTAAAAGCCAACTCCAAGAAGCCACCGCACGCATC
CAGCAACTCCAAGAAGAGCTAGATCATCAAATGTCAGTTTCTGAAAACTCTCCACCACCGCCCACTCCCCAAGAGGACAC
TCAAAGAAACGATTTATTAGCAACGCGCATCCAAGCTTTTAAATCCAGCCATGCAGAAAAGATACAAGAAAACACTACAG
AGGAGTTTGACAACCTCAAAGCTAAAGACACCGCCACCCATCAAAATAGACTTTTTAGAACTATCACGGCCGATAAGATG
ATTCCAGCTTTTCTTATCACGCCCATCAGTTCTAAATTAGCGGGCAAGGCCATTGCGCAGGTGGAAAGCGATGTGTTTGC
TAGCATGGGCAAAACTATCCTCATTCCTAAGGGCTCTAAAGTGATTGGTTACTACAATAATACCGATAAAGTGGGAGAAT
ACCGCCTGGACATCGTGTGGACTCGAATCATCACGCCCAAAGGGGTCAATATCATGCTCACTAACGCTAAAGGTGCAGAT
ATTAAAGGTTATAGTGGCCTTGTGGGTGAGATGATGACTCACAATCTCCAGCGTTATGGCTTACCCTTGCTAGTTTCTAC
TCTCTCCAATGGGCTTTTGATCGCCTTGACCTCTGCAATCGCCAATAAAACGGGTAAAAATAATTTTTTTGGAGATTATC
TTTTAATGCAGATGACGCGTCAAACGGGCATGGGATTAAATCAAATCGTAGCGCAAATTCTTAGAGATAAAAGCCAATTA
AACCCTGTGATTATCATTAGAGAGGGTAGCCGTGTGTTTATTTCGCCTAATTTAGATATCTTTTTTCCTTCTGCCAAAAA
TGGAGAAATTCAAGTAGAGGTTGTAGAAACGACCAAGTAA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (154-341)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	54.642	100	0.574