Detailed information    

insolico Bioinformatically predicted

Overview

Name   agrA   Type   Regulator
Locus tag   GAN20_RS03570 Genome accession   NZ_CP045085
Coordinates   726018..726734 (+) Length   238 a.a.
NCBI ID   WP_100006618.1    Uniprot ID   -
Organism   Staphylococcus pseudintermedius strain KCTC 43135     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 721018..731734
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GAN20_RS03545 - 722423..723226 (+) 804 WP_099987197.1 carbon-nitrogen family hydrolase -
  GAN20_RS12850 - 723511..723591 (-) 81 WP_110144734.1 delta-lysin family phenol-soluble modulin -
  GAN20_RS03555 - 723983..724549 (+) 567 WP_140232597.1 accessory gene regulator AgrB -
  GAN20_RS03560 agrD 724551..724688 (+) 138 WP_063278585.1 cyclic lactone autoinducer peptide AgrD -
  GAN20_RS03565 agrC 724712..726004 (+) 1293 WP_152162931.1 quorum-sensing sensor histidine kinase AgrC -
  GAN20_RS03570 agrA 726018..726734 (+) 717 WP_100006618.1 quorum-sensing response regulator AgrA Regulator
  GAN20_RS03575 - 726794..727738 (-) 945 WP_115807334.1 carbohydrate kinase family protein -
  GAN20_RS03580 - 727742..729226 (-) 1485 WP_063278588.1 sucrose-6-phosphate hydrolase -
  GAN20_RS03585 - 729282..730229 (-) 948 WP_063278589.1 LacI family DNA-binding transcriptional regulator -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 28016.18 Da        Isoelectric Point: 5.4368

>NTDB_id=391753 GAN20_RS03570 WP_100006618.1 726018..726734(+) (agrA) [Staphylococcus pseudintermedius strain KCTC 43135]
MKILICEDDPKQRERMVSIIENYIMIEEKPMKIELATNDPYAILETSKNMTDIGCYFLDIQLESDINGIKLGSEIRKHDP
VGNIIFVTSHSELTYLTFVYKVAAMDFIFKDDPEELRTRIIDCLETALKRLDLLTKDHTVETLELKRGTSSVYVNYDEVM
FFESSPKSHRLIAHLDNRQIEFYGNLKELAQLDDRFFRCHNSYVLNRRNITSVDTKERIAYFKNEEFCYVSVRNLKKI

Nucleotide


Download         Length: 717 bp        

>NTDB_id=391753 GAN20_RS03570 WP_100006618.1 726018..726734(+) (agrA) [Staphylococcus pseudintermedius strain KCTC 43135]
ATGAAAATTTTGATTTGTGAGGATGATCCTAAACAACGCGAACGTATGGTGTCCATTATTGAAAACTATATTATGATTGA
AGAGAAGCCGATGAAAATTGAGCTTGCTACCAATGACCCTTATGCTATCTTAGAAACTTCTAAAAACATGACTGATATTG
GCTGCTACTTTTTAGATATTCAATTAGAGTCTGATATTAACGGGATTAAATTAGGGAGCGAAATTCGTAAGCACGATCCT
GTTGGGAATATTATTTTTGTGACGAGTCATAGTGAGCTGACGTACTTGACGTTTGTCTATAAAGTGGCTGCCATGGATTT
TATTTTTAAAGATGATCCTGAAGAATTAAGGACACGCATTATCGATTGTTTAGAAACAGCATTAAAACGGCTTGATTTAT
TAACAAAAGATCATACTGTTGAAACTTTGGAACTCAAACGTGGAACAAGCTCGGTTTACGTGAACTATGACGAAGTGATG
TTTTTCGAGTCTTCACCGAAGTCACATCGTTTAATCGCGCATTTAGACAATCGTCAAATCGAATTTTACGGCAATTTGAA
AGAGTTAGCTCAACTCGATGATCGATTCTTCAGATGCCACAACAGTTATGTGCTAAACAGAAGAAATATTACAAGTGTCG
ATACGAAAGAACGGATTGCTTATTTCAAAAATGAAGAATTTTGTTACGTGTCGGTGCGTAATTTGAAGAAAATTTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(3-120)

LytTr DNA-binding domain (LytTR)

(152-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  agrA Staphylococcus aureus N315

82.773

100

0.828

Multiple sequence alignment