Detailed information
Bioinformatically predicted
Overview
| Name | comB2 | Type | Machinery gene |
| Locus tag | HFELIS_RS03985 | Genome accession | NC_014810 |
| Coordinates | 783566..783835 (+) | Length | 89 a.a. |
| NCBI ID | WP_013469253.1 | Uniprot ID | E7ABR4 |
| Organism | Helicobacter felis ATCC 49179 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 778566..788835
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HFELIS_RS03960 (HFELIS_07980) | - | 778639..779700 (-) | 1062 | WP_013469248.1 | AI-2E family transporter | - |
| HFELIS_RS03965 (HFELIS_07990) | dapF | 779746..780543 (+) | 798 | WP_013469249.1 | diaminopimelate epimerase | - |
| HFELIS_RS03970 (HFELIS_08000) | - | 781037..782107 (+) | 1071 | WP_013469250.1 | site-specific DNA-methyltransferase | - |
| HFELIS_RS03975 (HFELIS_08010) | - | 782097..782894 (+) | 798 | WP_013469251.1 | HinfI family type II restriction enzyme | - |
| HFELIS_RS03980 (HFELIS_08020) | - | 783029..783451 (+) | 423 | WP_148229933.1 | hypothetical protein | - |
| HFELIS_RS03985 (HFELIS_08030) | comB2 | 783566..783835 (+) | 270 | WP_013469253.1 | TrbC/VirB2 family protein | Machinery gene |
| HFELIS_RS03990 (HFELIS_08040) | comB3 | 783835..784110 (+) | 276 | WP_013469254.1 | hypothetical protein | Machinery gene |
| HFELIS_RS08505 (HFELIS_08050) | - | 784134..785546 (-) | 1413 | WP_231844198.1 | outer membrane protein | - |
| HFELIS_RS04000 (HFELIS_08060) | - | 785606..786175 (-) | 570 | WP_013469256.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 89 a.a. Molecular weight: 10160.19 Da Isoelectric Point: 9.8574
>NTDB_id=39174 HFELIS_RS03985 WP_013469253.1 783566..783835(+) (comB2) [Helicobacter felis ATCC 49179]
MRRLGVLWGFGVCGLYAQGAEGFFNAIEEQLKSNTAKGILMLIFIGIAFYVWRNLDRWREIFFTILGVVLGIMLFFKAPA
LASWFMGLF
MRRLGVLWGFGVCGLYAQGAEGFFNAIEEQLKSNTAKGILMLIFIGIAFYVWRNLDRWREIFFTILGVVLGIMLFFKAPA
LASWFMGLF
Nucleotide
Download Length: 270 bp
>NTDB_id=39174 HFELIS_RS03985 WP_013469253.1 783566..783835(+) (comB2) [Helicobacter felis ATCC 49179]
ATGAGGCGTTTAGGGGTGCTTTGGGGTTTTGGGGTCTGTGGTTTGTATGCGCAGGGAGCAGAGGGTTTTTTTAATGCCAT
TGAAGAGCAATTAAAGAGTAACACCGCTAAGGGGATTTTGATGTTGATCTTCATTGGGATCGCCTTTTATGTATGGCGCA
ATTTAGATCGTTGGCGCGAAATTTTCTTCACTATCTTGGGTGTGGTGCTTGGGATCATGCTCTTTTTTAAAGCCCCTGCT
TTGGCCTCGTGGTTTATGGGGTTATTTTGA
ATGAGGCGTTTAGGGGTGCTTTGGGGTTTTGGGGTCTGTGGTTTGTATGCGCAGGGAGCAGAGGGTTTTTTTAATGCCAT
TGAAGAGCAATTAAAGAGTAACACCGCTAAGGGGATTTTGATGTTGATCTTCATTGGGATCGCCTTTTATGTATGGCGCA
ATTTAGATCGTTGGCGCGAAATTTTCTTCACTATCTTGGGTGTGGTGCTTGGGATCATGCTCTTTTTTAAAGCCCCTGCT
TTGGCCTCGTGGTTTATGGGGTTATTTTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB2 | Helicobacter pylori 26695 |
74.699 |
93.258 |
0.697 |