Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | HFELIS_RS03990 | Genome accession | NC_014810 |
| Coordinates | 783835..784110 (+) | Length | 91 a.a. |
| NCBI ID | WP_013469254.1 | Uniprot ID | E7ABR5 |
| Organism | Helicobacter felis ATCC 49179 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 778835..789110
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HFELIS_RS03965 (HFELIS_07990) | dapF | 779746..780543 (+) | 798 | WP_013469249.1 | diaminopimelate epimerase | - |
| HFELIS_RS03970 (HFELIS_08000) | - | 781037..782107 (+) | 1071 | WP_013469250.1 | site-specific DNA-methyltransferase | - |
| HFELIS_RS03975 (HFELIS_08010) | - | 782097..782894 (+) | 798 | WP_013469251.1 | HinfI family type II restriction enzyme | - |
| HFELIS_RS03980 (HFELIS_08020) | - | 783029..783451 (+) | 423 | WP_148229933.1 | hypothetical protein | - |
| HFELIS_RS03985 (HFELIS_08030) | comB2 | 783566..783835 (+) | 270 | WP_013469253.1 | TrbC/VirB2 family protein | Machinery gene |
| HFELIS_RS03990 (HFELIS_08040) | comB3 | 783835..784110 (+) | 276 | WP_013469254.1 | hypothetical protein | Machinery gene |
| HFELIS_RS08505 (HFELIS_08050) | - | 784134..785546 (-) | 1413 | WP_231844198.1 | outer membrane protein | - |
| HFELIS_RS04000 (HFELIS_08060) | - | 785606..786175 (-) | 570 | WP_013469256.1 | hypothetical protein | - |
Sequence
Protein
Download Length: 91 a.a. Molecular weight: 10424.29 Da Isoelectric Point: 4.3059
>NTDB_id=39175 HFELIS_RS03990 WP_013469254.1 783835..784110(+) (comB3) [Helicobacter felis ATCC 49179]
MSFGYPVLVVSVPNLKEISTKDKFLWLNAKSWILAIFIPFVLLPWLGILYSLLLYGGFLTFFSVLEFFDEDIADILIAHS
QIKTPSDDFYA
MSFGYPVLVVSVPNLKEISTKDKFLWLNAKSWILAIFIPFVLLPWLGILYSLLLYGGFLTFFSVLEFFDEDIADILIAHS
QIKTPSDDFYA
Nucleotide
Download Length: 276 bp
>NTDB_id=39175 HFELIS_RS03990 WP_013469254.1 783835..784110(+) (comB3) [Helicobacter felis ATCC 49179]
ATGAGCTTTGGTTACCCTGTGTTGGTGGTTTCTGTGCCCAACCTCAAGGAAATCTCTACGAAAGATAAATTTCTTTGGTT
GAACGCCAAATCTTGGATTTTAGCGATCTTTATCCCCTTTGTGCTCTTGCCATGGCTGGGTATCCTCTATAGCTTGCTCC
TATATGGAGGGTTTTTAACATTCTTTAGTGTTTTAGAATTTTTTGATGAAGACATTGCAGACATTTTGATCGCTCACTCT
CAGATCAAAACTCCTAGCGATGATTTTTACGCCTAA
ATGAGCTTTGGTTACCCTGTGTTGGTGGTTTCTGTGCCCAACCTCAAGGAAATCTCTACGAAAGATAAATTTCTTTGGTT
GAACGCCAAATCTTGGATTTTAGCGATCTTTATCCCCTTTGTGCTCTTGCCATGGCTGGGTATCCTCTATAGCTTGCTCC
TATATGGAGGGTTTTTAACATTCTTTAGTGTTTTAGAATTTTTTGATGAAGACATTGCAGACATTTTGATCGCTCACTCT
CAGATCAAAACTCCTAGCGATGATTTTTACGCCTAA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
61.176 |
93.407 |
0.571 |