Detailed information    

insolico Bioinformatically predicted

Overview


Name   luxP   Type   Regulator
Locus tag   F9277_RS22755 Genome accession   NZ_CP045071
Coordinates   976963..978060 (+) Length   365 a.a.
NCBI ID   WP_005453580.1    Uniprot ID   A0A9X3RVB5
Organism   Vibrio harveyi strain WXL538     
Function   autoinducer sensor (predicted from homology)   
Competence regulation

Genomic Context


Location: 971963..983060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F9277_RS22725 (F9277_22725) - 972195..973184 (+) 990 WP_045489885.1 Gfo/Idh/MocA family protein -
  F9277_RS22730 (F9277_22730) - 973326..974663 (-) 1338 WP_152164146.1 MATE family efflux transporter -
  F9277_RS22735 (F9277_22735) - 974787..975101 (-) 315 WP_005453573.1 DUF496 family protein -
  F9277_RS22740 (F9277_22740) - 975340..975543 (+) 204 WP_026000173.1 hypothetical protein -
  F9277_RS22745 (F9277_22745) - 975637..976290 (+) 654 WP_005453575.1 YceH family protein -
  F9277_RS22750 (F9277_22750) - 976287..976613 (+) 327 WP_050940986.1 GIY-YIG nuclease family protein -
  F9277_RS22755 (F9277_22755) luxP 976963..978060 (+) 1098 WP_005453580.1 autoinducer 2-binding periplasmic protein LuxP Regulator
  F9277_RS22760 (F9277_22760) luxQ 978060..980639 (+) 2580 WP_005453581.1 quorum-sensing autoinducer 2 sensor kinase/phosphatase LuxQ -
  F9277_RS22765 (F9277_22765) - 980707..981369 (-) 663 WP_047515332.1 PilZ domain-containing protein -
  F9277_RS22770 (F9277_22770) - 981463..982389 (-) 927 WP_152164147.1 DMT family transporter -
  F9277_RS22775 (F9277_22775) - 982539..982994 (+) 456 WP_005453588.1 Lrp/AsnC family transcriptional regulator -

Sequence


Protein


Download         Length: 365 a.a.        Molecular weight: 41582.03 Da        Isoelectric Point: 6.7059

>NTDB_id=391692 F9277_RS22755 WP_005453580.1 976963..978060(+) (luxP) [Vibrio harveyi strain WXL538]
MKKALLFSLISMVGFSPVSHATQVLNGYWGYQEFLDEFPQQRKLTNALAEAVRERPVPFSKNKKRPLKISVVYPGQQVSD
YWVRNIAAFEKRLDKLNINYQINQVFTRPNADIKQQSLSLMEALKSKSDYLIFTLDTTRHRKFVEHVLDSTNTKLILQNI
TTPVREWDKHQPFLYVGFDHAEGSRELATEFGKYFPKHTYYSVLYFSEGYISDVRGDTFIHQVNRDNNFELQSAYYTKAT
KQSGYDAAKASLEKHPDVDFIYACSTDVALGAVEALADLGRSDVMINGWGGGSAELDAIQKGDLDITVMRMNDDTGIAMA
EAIKWDLEGKPVPTVYSGDFEIVTKADSPERIETLKKRAFRYSDN

Nucleotide


Download         Length: 1098 bp        

>NTDB_id=391692 F9277_RS22755 WP_005453580.1 976963..978060(+) (luxP) [Vibrio harveyi strain WXL538]
ATGAAAAAAGCGTTACTATTTTCCCTGATTTCTATGGTCGGTTTCTCTCCTGTTTCACATGCAACGCAAGTGCTCAATGG
CTACTGGGGTTATCAAGAGTTCTTGGATGAATTCCCGCAGCAGCGAAAACTCACTAATGCTTTAGCAGAAGCCGTTCGTG
AACGTCCTGTACCATTCTCTAAAAACAAAAAGCGTCCGCTTAAAATATCCGTGGTTTATCCGGGGCAGCAAGTATCTGAT
TACTGGGTAAGAAACATTGCGGCATTTGAAAAGCGCTTGGACAAGCTAAATATCAACTATCAGATCAACCAAGTTTTCAC
ACGCCCTAATGCGGATATTAAGCAGCAAAGCTTGTCGTTAATGGAAGCGCTGAAGAGCAAATCCGATTATTTGATTTTTA
CGTTAGATACAACCAGACACCGCAAATTTGTTGAACACGTTCTTGATTCAACAAACACCAAATTGATCTTACAAAATATC
ACGACACCAGTGCGTGAATGGGATAAACATCAACCGTTTTTATATGTCGGATTTGATCACGCGGAAGGCAGCCGTGAATT
AGCGACAGAATTCGGAAAGTACTTTCCAAAGCACACCTATTACAGTGTGCTCTATTTCTCGGAAGGGTACATTAGTGATG
TGAGAGGTGACACGTTTATTCATCAGGTTAACCGTGATAATAACTTTGAACTACAATCAGCGTACTACACTAAAGCAACA
AAGCAGTCGGGATATGATGCTGCAAAAGCAAGTTTAGAAAAGCACCCAGATGTTGATTTTATTTATGCGTGCTCGACTGA
TGTTGCGTTAGGCGCTGTTGAGGCGTTAGCAGATTTAGGGCGAAGTGATGTTATGATCAACGGTTGGGGCGGTGGTTCAG
CAGAGCTTGACGCTATTCAGAAAGGCGACTTAGATATCACTGTCATGCGTATGAATGATGATACTGGTATCGCCATGGCA
GAAGCCATTAAGTGGGATTTGGAAGGAAAACCTGTCCCAACCGTATATTCCGGTGATTTTGAAATTGTTACCAAAGCTGA
TTCACCGGAAAGAATCGAAACGCTGAAGAAGCGTGCATTTAGATATTCAGATAATTGA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxP Vibrio cholerae strain A1552

63.187

99.726

0.63


Multiple sequence alignment