Detailed information NTG0391661

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: F9277_RS01930
• Genome accession: NZ_CP045070
• Coordinates: 379163..380146 (+)
• Length: 327 a.a.
• NCBI ID: WP_005452115.1
• Uniprot ID: A0A812FCY7
• Organism: Vibrio harveyi strain WXL538
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 374163..385146

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
F9277_RS01895 (F9277_01895)	ftsB	374169..374450 (+)	282	WP_005452106.1	cell division protein FtsB	-
F9277_RS01900 (F9277_01900)	ispD	374452..375162 (+)	711	WP_005452107.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
F9277_RS01905 (F9277_01905)	ispF	375177..375653 (+)	477	WP_005425365.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
F9277_RS01910 (F9277_01910)	truD	375699..376742 (+)	1044	WP_152163045.1	tRNA pseudouridine(13) synthase TruD	-
F9277_RS01915 (F9277_01915)	surE	376742..377518 (+)	777	WP_152163046.1	5'/3'-nucleotidase SurE	-
F9277_RS01920 (F9277_01920)	-	377518..378144 (+)	627	WP_005452113.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
F9277_RS01925 (F9277_01925)	-	378159..379082 (+)	924	WP_009698767.1	peptidoglycan DD-metalloendopeptidase family protein	-
F9277_RS01930 (F9277_01930)	rpoS	379163..380146 (+)	984	WP_005452115.1	RNA polymerase sigma factor RpoS	Regulator
F9277_RS01935 (F9277_01935)	mutS	380240..382801 (-)	2562	WP_009698766.1	DNA mismatch repair protein MutS	-
F9277_RS01940 (F9277_01940)	pncC	382887..383369 (+)	483	WP_005452118.1	nicotinamide-nucleotide amidase	-
F9277_RS01945 (F9277_01945)	recA	383571..384614 (+)	1044	WP_050907766.1	recombinase RecA	Machinery gene

Sequence

Protein

• Length: 327 a.a.
• Molecular weight: 37236.10 Da
• Isoelectric Point: 4.7232

>NTDB_id=391661 F9277_RS01930 WP_005452115.1 379163..380146(+) (rpoS) [Vibrio harveyi strain WXL538]
MSISNTVTKVEEFEYDNAQSEGISNGLEKPSNGTKTAAREEFDASSKSLDATQLYLGEIGFSPLLTAEEEVLYARRALRG
DEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQTRTIR
LPIHVVKELNIYLRTARELSQKLDHEPTAEEIAAQLDIPVEDVSKMLRLNERISSVDTPIGGDGEKALLDIIPDANNSDP
EVSTQDDDIKSSLIHWLEELNPKQKEVLARRFGLLGYEPSTLEEVGREIGLTRERVRQIQVEGLRRLREILIKQGLNMEN
LFNVEDD

Nucleotide

• Length: 984 bp

>NTDB_id=391661 F9277_RS01930 WP_005452115.1 379163..380146(+) (rpoS) [Vibrio harveyi strain WXL538]
ATGAGTATCAGCAACACAGTAACCAAAGTTGAAGAGTTCGAATATGATAATGCACAATCGGAAGGCATTTCTAACGGACT
TGAAAAACCATCTAACGGAACCAAAACAGCAGCACGCGAAGAGTTTGATGCGAGCAGCAAGAGCCTAGACGCGACTCAGC
TTTACCTAGGTGAAATTGGTTTTTCACCTCTACTTACTGCAGAAGAAGAAGTACTTTATGCACGACGTGCACTGCGTGGC
GATGAAGCCGCTCGCAAACGCATGATCGAAAGTAACTTGCGTCTTGTAGTGAAGATCTCTCGCCGATACAGCAATCGTGG
TCTTGCGCTTCTTGATCTTATTGAAGAAGGTAACCTAGGTTTGATCCGTGCGGTCGAGAAGTTTGATCCAGAACGAGGCT
TCCGTTTCTCAACTTACGCGACGTGGTGGATTCGCCAAACGATCGAACGTGCGTTGATGAACCAAACTCGTACAATCCGT
CTGCCAATTCATGTGGTTAAAGAGCTGAACATTTATCTGCGTACAGCGCGTGAACTTTCTCAGAAGCTCGACCATGAACC
AACAGCAGAAGAGATTGCTGCACAGTTAGATATCCCAGTAGAAGACGTAAGTAAAATGCTTCGCCTTAACGAGCGTATTA
GCTCTGTCGATACTCCAATCGGTGGTGACGGCGAGAAAGCGTTACTGGATATTATTCCTGATGCAAACAACTCGGATCCT
GAAGTTTCCACTCAAGACGATGACATCAAATCTTCATTGATCCATTGGCTAGAAGAGCTGAATCCAAAACAGAAAGAAGT
GCTGGCACGTCGTTTTGGTCTGCTTGGTTATGAGCCATCAACGCTTGAAGAAGTGGGACGTGAAATTGGTTTAACACGCG
AACGTGTTCGCCAGATCCAAGTGGAAGGCTTACGTCGACTACGCGAGATCTTGATTAAACAAGGTCTGAACATGGAAAAC
TTGTTCAACGTAGAAGACGACTAA

Domains

Predicted by InterproScan.

• Sigma-70 region 3 (Sigma70_r3) (168-241)

• Sigma-70, region 4 (Sigma70_r4) (256-309)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (50-83)

• Sigma-70 region 2 (Sigma70_r2) (88-157)

3D structure

• AlphaFold DB: A0A812FCY7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	83.832	100	0.856