Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   GIX98_RS22540 Genome accession   NZ_CP045064
Coordinates   4690467..4691093 (+) Length   208 a.a.
NCBI ID   WP_008499926.1    Uniprot ID   A0AAX1WHW5
Organism   Enterobacter roggenkampii strain WCHER090065     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4685467..4696093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GIX98_RS22520 (GBN88_01010) - 4685864..4687624 (-) 1761 WP_087855301.1 AAA family ATPase -
  GIX98_RS22525 (GBN88_01005) matP 4687811..4688263 (+) 453 WP_008499929.1 macrodomain Ter protein MatP -
  GIX98_RS22530 (GBN88_01000) ompA 4688330..4689385 (-) 1056 WP_008499928.1 porin OmpA -
  GIX98_RS22535 (GBN88_00995) sulA 4689740..4690249 (-) 510 WP_023618859.1 SOS-induced cell division inhibitor SulA -
  GIX98_RS22540 (GBN88_00990) sxy/tfoX 4690467..4691093 (+) 627 WP_008499926.1 TfoX/Sxy family DNA transformation protein Regulator
  GIX98_RS22545 (GBN88_00985) yccS 4691050..4693212 (-) 2163 WP_039025219.1 YccS family putative transporter -
  GIX98_RS22550 (GBN88_00980) - 4693232..4693678 (-) 447 WP_008499924.1 YccF domain-containing protein -
  GIX98_RS22555 (GBN88_00975) helD 4693802..4695856 (+) 2055 WP_047071934.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23885.49 Da        Isoelectric Point: 9.6439

>NTDB_id=391641 GIX98_RS22540 WP_008499926.1 4690467..4691093(+) (sxy/tfoX) [Enterobacter roggenkampii strain WCHER090065]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAKYCVKNASSFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSSFALSAARKERYQRHQRTRLKDLPNLTFQLEVLLFEAGITNEETLRALGARASWLKMRAKN
KALSIKVLFALEGAIEGLHEAALPAGIRRELTEWFNALPEPQESRSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=391641 GIX98_RS22540 WP_008499926.1 4690467..4691093(+) (sxy/tfoX) [Enterobacter roggenkampii strain WCHER090065]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTCTCTCCGTTGGGCGAGATTCATCATCGCGCGCT
GTTTGGCGGTTACACCCTGGCGGTCGATGATGCGGTCTTTGCCATGGTGTCCGATGGCGAACTTTACCTTCGCGCGTGTG
AAGAGAGTGCAAAATACTGTGTAAAAAATGCTTCCTCCTTCTTGACGTTGATGAAGCGAGGCCGCCCGGTGCTGCTCAAC
TATTATCGTGTGGATGACGGATTATGGCAGGACAGGGAGCGGTTGCTTCAGCTCTCCTCGTTTGCACTCAGTGCGGCAAG
GAAAGAGCGCTACCAGCGTCATCAACGAACCCGTCTTAAGGATCTGCCGAACCTGACCTTTCAGCTTGAAGTTTTGCTCT
TTGAAGCCGGTATCACCAATGAAGAAACGCTGCGGGCGCTGGGTGCCAGAGCGAGCTGGCTGAAGATGCGGGCAAAGAAT
AAAGCACTCAGTATAAAAGTGCTCTTTGCGTTGGAAGGAGCTATCGAAGGGCTGCATGAGGCGGCACTCCCGGCAGGTAT
CCGCCGGGAGCTGACGGAGTGGTTTAATGCGCTGCCTGAGCCGCAGGAGAGTCGTTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(117-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.128

97.596

0.567

Multiple sequence alignment