Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   GBN67_RS14390 Genome accession   NZ_CP045051
Coordinates   2976159..2977727 (+) Length   522 a.a.
NCBI ID   WP_234963167.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain AJ312     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2971159..2982727
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GBN67_RS14370 (GBN67_14390) - 2971635..2972939 (+) 1305 WP_010325700.1 homoserine dehydrogenase -
  GBN67_RS14375 (GBN67_14395) thrC 2973005..2974144 (+) 1140 WP_004692833.1 threonine synthase -
  GBN67_RS14380 (GBN67_14400) - 2974231..2975286 (-) 1056 WP_178928641.1 serine hydrolase -
  GBN67_RS14385 (GBN67_14405) - 2975502..2976137 (+) 636 WP_004692836.1 response regulator -
  GBN67_RS14390 (GBN67_14410) pilS 2976159..2977727 (+) 1569 WP_234963167.1 sensor histidine kinase Regulator
  GBN67_RS14395 (GBN67_14415) pilR 2977800..2979164 (+) 1365 WP_394854081.1 sigma-54-dependent transcriptional regulator Regulator
  GBN67_RS14400 (GBN67_14420) - 2979169..2980344 (-) 1176 WP_234963169.1 S41 family peptidase -
  GBN67_RS14405 (GBN67_14425) gpmI 2980363..2981910 (-) 1548 WP_062033296.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 522 a.a.        Molecular weight: 59637.20 Da        Isoelectric Point: 6.3377

>NTDB_id=391547 GBN67_RS14390 WP_234963167.1 2976159..2977727(+) (pilS) [Acinetobacter johnsonii strain AJ312]
MLQYSTNIQLNQYRLGVWYASYRLFIGCCLLLVYLLTYEQLFSNYQYPILYRSVLIGFIFISAFQLLCLKHVRKRIPLQL
TLLFIVDVISLSLLTFATDGPNLQLSLLFVITIFAACVLVDKQKALIITLIAVITLVYQHFIGTLFSISSLNTIGNSAVL
AFLFFVVYGSGQIAVRRFQVLENLNFYQSQELDQLQNINRYILEQTELGYLVLDENCHMVLSNPAACALLGISPIYAYDK
YPLYKAQPDLFELLKFDQLKNGEKFQFTSQLSRFQIQIEIQKLQVPNQTLTLFVLQDAQKINQRVQQLKLAALGQLSASI
AHEIRNPLAAITQANELMQVNDPEQALLHNMIAKQASRIDKIISDTLSMARSKETYPTLIDVAAFLEHFIVEDLPDVKDQ
IDYRISDQAQIQFDEQQLRQVLINLIRNAIRHNAAEAEHIQIRVYSYKNLVHIEVCDFGEGVATQDQTALFQPFFSTSIN
GTGLGLYLSHSFCEANQAKLYYVEQKIGACFRIECPRINNDV

Nucleotide


Download         Length: 1569 bp        

>NTDB_id=391547 GBN67_RS14390 WP_234963167.1 2976159..2977727(+) (pilS) [Acinetobacter johnsonii strain AJ312]
ATGCTGCAATACTCAACCAATATTCAGTTAAATCAATACCGTCTAGGTGTTTGGTATGCATCGTATCGACTGTTTATTGG
TTGCTGTTTGTTGTTGGTTTATCTACTGACTTATGAGCAGCTATTTTCAAATTATCAATATCCAATACTGTATCGTTCCG
TCCTGATTGGCTTTATTTTTATTAGTGCCTTTCAGCTATTGTGCCTCAAGCATGTGCGCAAGCGCATACCACTTCAGCTC
ACCTTGTTGTTTATCGTCGATGTCATTAGCCTCAGTTTACTCACTTTTGCCACCGATGGTCCGAACTTACAGTTAAGCTT
ATTGTTTGTGATCACGATCTTTGCCGCTTGTGTATTGGTCGATAAACAAAAAGCGCTCATCATCACCTTGATTGCTGTAA
TTACACTGGTTTATCAACACTTTATTGGAACGCTATTTTCAATTAGTTCACTGAATACCATTGGCAACAGTGCCGTGCTC
GCCTTTTTGTTCTTTGTGGTTTATGGGTCTGGACAAATTGCAGTCCGACGTTTTCAAGTCCTTGAAAATTTAAACTTCTA
TCAGTCCCAAGAGCTGGACCAACTGCAAAACATTAACCGTTATATTTTAGAGCAAACCGAGCTCGGCTATTTGGTTCTCG
ATGAAAACTGCCACATGGTGCTGAGTAATCCTGCCGCATGTGCATTATTGGGCATCTCCCCGATTTATGCCTATGACAAA
TATCCCTTATATAAGGCACAGCCTGATTTATTTGAACTACTCAAATTCGACCAACTGAAAAATGGGGAAAAATTCCAATT
TACATCCCAACTGAGCCGCTTTCAAATTCAGATCGAAATTCAAAAACTTCAAGTCCCGAATCAGACACTGACCTTATTTG
TGCTGCAAGATGCACAAAAAATTAATCAACGTGTACAACAACTCAAGCTGGCTGCACTGGGTCAACTTTCTGCCAGCATT
GCACATGAAATTCGCAACCCACTGGCAGCCATCACCCAAGCCAATGAATTGATGCAGGTGAACGATCCTGAGCAAGCCCT
GTTACATAACATGATCGCCAAACAAGCTTCAAGGATTGATAAAATTATTAGCGATACACTGAGTATGGCACGCAGTAAAG
AAACCTATCCGACCTTGATTGATGTCGCTGCTTTTTTAGAACATTTTATCGTTGAAGATTTACCCGATGTCAAAGATCAA
ATTGATTACCGCATTTCCGATCAAGCTCAGATTCAGTTTGATGAACAACAACTGAGGCAAGTGCTGATCAACCTGATTCG
AAACGCCATTCGGCATAATGCAGCTGAAGCCGAGCACATTCAAATTCGTGTCTATAGCTACAAAAACCTCGTCCATATTG
AGGTCTGCGATTTTGGTGAAGGGGTCGCCACTCAGGATCAAACCGCTCTGTTTCAACCCTTTTTTAGTACCTCCATCAAT
GGAACTGGGTTAGGATTATATTTATCCCATAGTTTCTGCGAAGCCAACCAAGCTAAGCTATACTATGTAGAACAAAAAAT
AGGGGCATGCTTTCGGATTGAATGCCCCCGTATAAACAATGACGTGTAA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(312-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(414-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

59.885

99.808

0.598

Multiple sequence alignment