Detailed information    

insolico Bioinformatically predicted

Overview

Name   priA   Type   Machinery gene
Locus tag   GBN67_RS13715 Genome accession   NZ_CP045051
Coordinates   2829224..2831446 (+) Length   740 a.a.
NCBI ID   WP_234963119.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain AJ312     
Function   DNA puliing through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2824224..2836446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GBN67_RS13690 (GBN67_13705) - 2825229..2825567 (-) 339 WP_062035119.1 tRNA-binding protein -
  GBN67_RS13695 (GBN67_13710) - 2825766..2826635 (-) 870 WP_234964115.1 IS5 family transposase -
  GBN67_RS13700 (GBN67_13715) - 2826776..2827111 (-) 336 WP_183174634.1 hypothetical protein -
  GBN67_RS13705 (GBN67_13720) gspG 2827395..2827832 (-) 438 WP_125274170.1 type II secretion system major pseudopilin GspG -
  GBN67_RS13710 (GBN67_13725) gspF 2827866..2829071 (-) 1206 WP_234955165.1 type II secretion system inner membrane protein GspF -
  GBN67_RS13715 (GBN67_13730) priA 2829224..2831446 (+) 2223 WP_234963119.1 primosomal protein N' Machinery gene
  GBN67_RS13720 (GBN67_13735) - 2831529..2833370 (+) 1842 WP_234963120.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  GBN67_RS13725 (GBN67_13740) - 2833421..2834296 (+) 876 WP_004978815.1 Hsp33 family molecular chaperone HslO -
  GBN67_RS13730 (GBN67_13745) - 2834496..2834948 (+) 453 WP_234963121.1 DUF2147 domain-containing protein -
  GBN67_RS13735 (GBN67_13750) - 2835093..2836046 (+) 954 WP_234963122.1 DnaJ C-terminal domain-containing protein -
  GBN67_RS13740 (GBN67_13755) - 2836057..2836413 (+) 357 WP_004978810.1 chaperone modulator CbpM -

Sequence

Protein


Download         Length: 740 a.a.        Molecular weight: 84233.12 Da        Isoelectric Point: 8.8797

>NTDB_id=391541 GBN67_RS13715 WP_234963119.1 2829224..2831446(+) (priA) [Acinetobacter johnsonii strain AJ312]
MPENTLSTTPSYRIRVAVPVYLYDCFDYSLTAEQYHQAEVGARVAVSFGRQNVVGVIVEKLTDEKPLDLGFKLKAITELL
DDSAILDAKVLSLLTWSAQYYQFPIGEVMHAALPSFLRQGKPYNLLARMWKLIDDHAEDKLKRSEKQQDAYKILKLHPTG
TSENILNLAGIETATLKALEKKKITQCILEAQDFKPQAMTLAQMPLTPNDEQKRAIQNILKARHSYHAFLLDGLTGSGKT
EVYLQVMQEVLKQGKQVLVLVPEIGLTPQTVSRFQSRFHCHIALLHSGLNDSKRLQAWQSAQTGRASIVIGTRSAIYTPL
PHLGLIILDEEHDLSFKQQEGFRYHARDVALYRAHLENCPIILGSATPSIDSYALVEQGKMTRLELDQRAGVAVMPKMHV
IDLKVAQKQNGISQQLIHEVQKRLDKKEQVLIFLNRRGYAPVLICESCGWQAKCPHCDANFTVHRQPYQHLHCHHCGTIH
RMPEHCPQCQHSELKPIGLGTAKVEENLQELFPNFDVIRVDRDSTSRVGSWQKIYNKIQKSEPIILLGTQMLAKGHHFPY
VTLVAILDIDSGLLSVDFRATERTAQLIIQVAGRAGRGEKKGEVYLQTLRPDHPLLNTLLESGYRSFAKQTLKERKAAWM
PPYRYAALLRCESKDQELNQNFLQEHAQALRQASENSIDIWGPIPAPMERKAGRYQAHMVLLSKDRARMHFYIRQWWQNV
WHNKPHGMKLSLDIDPQELS

Nucleotide


Download         Length: 2223 bp        

>NTDB_id=391541 GBN67_RS13715 WP_234963119.1 2829224..2831446(+) (priA) [Acinetobacter johnsonii strain AJ312]
ATGCCAGAAAATACACTTTCCACCACACCAAGCTACCGTATTCGTGTGGCTGTTCCCGTTTATCTATATGACTGTTTTGA
CTATAGTTTAACGGCTGAACAATACCACCAAGCTGAAGTGGGTGCACGTGTGGCTGTCTCATTTGGTCGCCAAAATGTGG
TCGGTGTCATTGTTGAGAAACTCACTGATGAGAAACCACTCGATTTAGGCTTTAAACTCAAAGCCATAACTGAGTTGCTC
GATGACAGCGCTATTCTAGATGCTAAAGTTTTAAGTTTATTGACATGGTCAGCGCAATATTACCAATTTCCCATTGGTGA
AGTGATGCATGCTGCTTTGCCCAGCTTTTTACGCCAAGGCAAACCCTATAATTTACTGGCGCGGATGTGGAAGCTGATTG
ATGATCATGCCGAAGACAAATTGAAGCGTTCTGAAAAACAACAAGATGCCTATAAAATTTTAAAGCTACATCCCACCGGA
ACGTCTGAAAACATTCTAAATTTGGCTGGCATTGAAACTGCGACCTTAAAAGCCTTAGAAAAAAAGAAAATCACCCAGTG
CATACTTGAAGCCCAAGACTTTAAACCGCAAGCCATGACACTGGCACAAATGCCCCTCACGCCCAATGATGAACAAAAGC
GTGCCATTCAAAATATTCTCAAAGCTCGTCATAGCTACCACGCTTTCTTACTGGATGGTTTAACCGGTAGTGGCAAAACT
GAAGTCTACTTGCAAGTCATGCAAGAGGTTTTAAAACAAGGCAAACAAGTTTTGGTATTAGTGCCTGAAATTGGCCTCAC
CCCACAAACAGTGAGTCGTTTTCAGTCACGTTTTCACTGTCATATTGCGCTACTACATTCAGGTTTAAATGATTCTAAGC
GCCTGCAAGCCTGGCAAAGCGCACAAACAGGCAGAGCTTCGATTGTGATTGGCACACGTTCTGCCATCTATACGCCCCTT
CCGCATTTGGGTTTGATTATCTTAGATGAAGAACATGACTTATCTTTCAAGCAACAAGAAGGCTTCCGCTACCACGCTCG
TGATGTGGCTTTATACCGTGCGCACTTAGAAAACTGTCCGATTATCCTCGGTTCGGCAACGCCAAGTATCGACAGTTATG
CATTGGTTGAACAAGGCAAAATGACCCGTTTGGAGTTGGACCAACGTGCAGGTGTGGCCGTGATGCCGAAAATGCATGTG
ATCGATCTGAAAGTGGCACAAAAACAAAATGGCATCAGCCAACAGCTGATTCATGAAGTCCAAAAGCGCTTAGACAAAAA
AGAACAGGTGCTGATTTTTTTAAACCGTCGCGGCTATGCGCCTGTGTTGATTTGTGAAAGTTGTGGCTGGCAGGCGAAGT
GCCCACATTGCGATGCCAATTTTACCGTGCATCGACAGCCCTATCAGCATTTGCACTGTCACCACTGCGGCACCATCCAC
CGCATGCCTGAACACTGCCCACAATGTCAGCATAGCGAACTGAAACCAATTGGTTTAGGCACCGCAAAAGTTGAAGAAAA
CCTACAAGAACTGTTCCCAAATTTTGACGTAATTCGGGTGGATCGTGACTCGACCAGTCGAGTCGGCAGCTGGCAAAAAA
TCTATAACAAGATTCAGAAAAGTGAACCCATCATTTTGCTCGGCACTCAAATGCTGGCCAAAGGACATCACTTTCCTTAT
GTAACTTTGGTAGCAATTTTAGACATCGACTCGGGCTTACTCAGTGTAGACTTTCGTGCCACAGAACGTACTGCACAACT
CATCATCCAAGTCGCTGGACGTGCTGGGCGCGGCGAGAAAAAAGGCGAAGTCTATTTACAAACTCTACGTCCAGATCATC
CTTTGCTGAATACCCTGCTGGAATCAGGCTATCGCAGCTTTGCCAAGCAAACGTTGAAAGAGCGTAAAGCTGCATGGATG
CCACCTTATCGCTATGCGGCTTTATTGCGCTGTGAATCCAAAGACCAAGAACTGAACCAAAACTTTTTACAAGAGCATGC
GCAAGCACTGCGCCAAGCCTCCGAAAACAGTATTGATATTTGGGGGCCCATTCCTGCGCCGATGGAACGTAAAGCAGGCC
GCTATCAAGCGCATATGGTACTACTGTCCAAAGACCGTGCGCGGATGCATTTTTACATTCGTCAGTGGTGGCAAAATGTC
TGGCACAATAAACCGCATGGTATGAAATTGAGCCTTGATATTGATCCACAAGAGTTAAGTTAA

Domains

Predicted by InterproScan.

Primosomal protein N C-terminal domain (PriA_C)

(642-736)

DEAD/DEAH box helicase (DEAD)

(210-371)

3DNA-binding domain (3BD) (PriA_3primeBD)

(15-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  priA Acinetobacter baumannii D1279779

72.093

98.784

0.712

Multiple sequence alignment