Detailed information    

insolico Bioinformatically predicted

Overview

Name   tonB2   Type   Machinery gene
Locus tag   GBN67_RS01395 Genome accession   NZ_CP045051
Coordinates   272484..273341 (+) Length   285 a.a.
NCBI ID   WP_148825457.1    Uniprot ID   A0AAJ6LGC5
Organism   Acinetobacter johnsonii strain AJ312     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 267484..278341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GBN67_RS01360 (GBN67_01365) - 268098..268472 (-) 375 WP_148825454.1 hypothetical protein -
  GBN67_RS01365 - 268674..269086 (-) 413 Protein_264 GGDEF domain-containing protein -
  GBN67_RS01375 - 269105..269737 (-) 633 WP_234963415.1 GAF domain-containing protein -
  GBN67_RS01380 (GBN67_01375) - 270013..270588 (-) 576 WP_004691243.1 xanthine phosphoribosyltransferase -
  GBN67_RS01385 (GBN67_01380) - 270679..271389 (-) 711 WP_234951107.1 DUF3108 domain-containing protein -
  GBN67_RS01390 (GBN67_01385) - 271545..272222 (-) 678 WP_004977854.1 hypothetical protein -
  GBN67_RS01395 (GBN67_01390) tonB2 272484..273341 (+) 858 WP_148825457.1 energy transducer TonB Machinery gene
  GBN67_RS01400 (GBN67_01395) - 273632..275824 (+) 2193 WP_234963416.1 TonB-dependent siderophore receptor -
  GBN67_RS01405 (GBN67_01400) - 275995..276405 (-) 411 WP_234963417.1 hypothetical protein -
  GBN67_RS01410 (GBN67_01405) ybeY 276507..276986 (-) 480 WP_183175858.1 rRNA maturation RNase YbeY -
  GBN67_RS01415 (GBN67_01410) - 277044..278120 (-) 1077 WP_004977846.1 PhoH family protein -

Sequence

Protein


Download         Length: 285 a.a.        Molecular weight: 32585.06 Da        Isoelectric Point: 6.3661

>NTDB_id=391522 GBN67_RS01395 WP_148825457.1 272484..273341(+) (tonB2) [Acinetobacter johnsonii strain AJ312]
MPLAHDWWKDPIFTATVVLAVFLHLVVLTLQFAMPQENDAAVKEIAVTLRPSDQKIENADFLAQADQQGSGTFRESHRMS
SDMPAPMLEQSTGEQQRETLEQIQQKRELNFEEKLLMTTLSWQKQAEDNQRKKAMEEMNSQFQAKAAMVASLEAQYLQRQ
QNFSRQQKIKTVDGIQAKQDISAAYLEKFRQKVEFYGNRYYPEAAKQQRLAGEVRLMVILNASGGIRAIRLIDSSGHEML
DEAAKASVRKAAPFGGFDAKMKDISELRIVRTWRFDPAEAEFEVH

Nucleotide


Download         Length: 858 bp        

>NTDB_id=391522 GBN67_RS01395 WP_148825457.1 272484..273341(+) (tonB2) [Acinetobacter johnsonii strain AJ312]
ATGCCTTTGGCTCATGATTGGTGGAAAGACCCAATTTTTACAGCGACCGTTGTGCTGGCGGTGTTTTTGCATCTTGTAGT
TTTGACTTTGCAATTTGCGATGCCTCAAGAAAATGATGCGGCAGTGAAAGAAATTGCGGTTACCTTGCGTCCTTCTGATC
AAAAAATTGAAAATGCAGATTTTTTAGCGCAAGCCGATCAACAAGGTTCAGGGACCTTTCGTGAGTCACATCGCATGTCG
AGTGACATGCCCGCACCGATGCTTGAGCAAAGTACAGGCGAACAGCAGCGTGAAACTTTAGAACAGATCCAACAAAAACG
TGAGCTGAATTTTGAAGAAAAACTGTTAATGACCACTTTGAGTTGGCAAAAACAAGCTGAGGATAACCAGCGCAAAAAAG
CCATGGAAGAAATGAACAGTCAGTTTCAAGCCAAAGCAGCAATGGTGGCCAGCCTTGAAGCGCAATATTTACAACGCCAA
CAAAACTTTAGCCGTCAGCAAAAAATTAAAACAGTCGATGGGATTCAAGCCAAGCAAGATATTTCGGCAGCCTATCTTGA
AAAGTTTCGTCAGAAAGTGGAATTTTATGGCAACCGTTACTATCCAGAAGCAGCTAAACAACAACGACTGGCGGGTGAAG
TACGTTTAATGGTGATTCTAAATGCATCAGGAGGCATCCGCGCCATTCGCCTGATTGATAGTTCAGGCCATGAGATGCTC
GATGAGGCTGCAAAAGCCTCGGTGCGTAAGGCTGCACCATTCGGTGGATTTGATGCCAAAATGAAGGATATTTCTGAGTT
ACGCATTGTGCGTACATGGCGTTTTGATCCAGCAGAGGCAGAGTTTGAAGTGCACTGA

Domains

Predicted by InterproScan.

Gram-negative bacterial TonB protein C-terminal (TonB_C)

(198-257)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  tonB2 Acinetobacter baumannii D1279779

74.643

98.246

0.733

Multiple sequence alignment