Detailed information    

insolico Bioinformatically predicted

Overview


Name   kpsS   Type   Regulator
Locus tag   F1716_RS08225 Genome accession   NZ_CP045048
Coordinates   1518387..1519571 (-) Length   394 a.a.
NCBI ID   WP_002890768.1    Uniprot ID   -
Organism   Campylobacter jejuni subsp. jejuni strain NADC 20827     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context


Location: 1513387..1524571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F1716_RS08200 (F1716_08255) fliL 1514534..1515070 (+) 537 WP_002868488.1 flagellar basal body-associated protein FliL -
  F1716_RS08205 (F1716_08260) acpS 1515071..1515418 (+) 348 WP_002825806.1 holo-ACP synthase -
  F1716_RS08210 (F1716_08265) - 1515419..1515838 (-) 420 WP_002780440.1 hypothetical protein -
  F1716_RS08215 (F1716_08270) - 1515835..1517196 (-) 1362 WP_002860383.1 cytochrome P450 -
  F1716_RS08220 (F1716_08275) - 1517193..1518314 (-) 1122 WP_002890766.1 hypothetical protein -
  F1716_RS08225 (F1716_08280) kpsS 1518387..1519571 (-) 1185 WP_002890768.1 capsule polysaccharide modification protein KpsS Regulator
  F1716_RS08230 (F1716_08285) kpsC 1519568..1521637 (-) 2070 WP_057981416.1 capsular polysaccharide biosynthesis protein -
  F1716_RS08235 (F1716_08290) cysC 1521634..1522146 (-) 513 WP_002818256.1 cytidine diphosphoramidate kinase -
  F1716_RS08240 (F1716_08295) - 1522136..1522897 (-) 762 WP_002875234.1 CTP:phosphoglutamine cytidylyltransferase -
  F1716_RS08245 (F1716_08300) - 1522899..1523501 (-) 603 WP_002860377.1 gamma-glutamyl-CDP-amidate hydrolase -

Sequence


Protein


Download         Length: 394 a.a.        Molecular weight: 46854.60 Da        Isoelectric Point: 9.9369

>NTDB_id=391506 F1716_RS08225 WP_002890768.1 1518387..1519571(-) (kpsS) [Campylobacter jejuni subsp. jejuni strain NADC 20827]
MRFSTKIKKEFSGKNVLLLQGPVGNFFHHLAIKMKKKQTKVFKLNFNGGDFFFYPSGTRCKCDEKDLENFYRDFFQSKKI
DAILMYNDCRIIHTKAIKVAKELGIEIWIFEEGYLRPYCITLEKDGVNANSSLPRDKNFYLSQNIFTKESIKEIPGGFKF
MAFDAFLYWLFAFILAPFFNNKLHHRTLYPFEFLFWFRSLYRKYLYKITEKKLNEKIYNLEKKYFLAILQVYSDTQIKYH
YKKSIEHFIEETILSFANHARAKSYLVFKHHPMDRGYKNYSKLINDLSQKYHVEGRVLYVHDTHLPVLLRKALGCITINS
TVGLSAILEGCPTKVCGNAFYDFEGLSYPKKLQFFWREAHAYKPNPVLVCNFKKYLLQTNQFNGNFYKNFFLDK

Nucleotide


Download         Length: 1185 bp        

>NTDB_id=391506 F1716_RS08225 WP_002890768.1 1518387..1519571(-) (kpsS) [Campylobacter jejuni subsp. jejuni strain NADC 20827]
ATGAGATTTAGCACTAAAATTAAAAAAGAATTTAGCGGTAAAAATGTTTTACTCTTGCAAGGGCCTGTGGGAAATTTTTT
TCATCATCTTGCAATAAAAATGAAAAAAAAACAAACCAAAGTTTTTAAACTCAATTTTAACGGTGGAGATTTTTTTTTCT
ATCCTAGTGGAACGAGGTGTAAGTGCGATGAAAAAGATCTTGAAAATTTCTATAGAGATTTTTTTCAAAGCAAAAAAATC
GATGCTATTTTAATGTATAATGATTGTCGCATTATACATACTAAGGCTATTAAAGTGGCTAAAGAATTAGGAATTGAAAT
ATGGATTTTTGAAGAAGGATATTTAAGGCCTTATTGTATTACTTTGGAAAAAGATGGAGTGAATGCAAATTCTTCTTTAC
CGCGTGATAAAAATTTTTATCTTTCTCAAAATATTTTTACCAAAGAAAGCATAAAAGAAATTCCAGGTGGATTTAAATTT
ATGGCTTTTGATGCTTTTTTGTATTGGTTGTTTGCTTTTATTTTGGCTCCATTTTTTAACAACAAACTTCATCATCGCAC
TTTATATCCTTTTGAATTTTTATTTTGGTTTAGATCATTGTATAGAAAGTATCTTTATAAGATTACAGAAAAAAAACTAA
ATGAAAAGATTTATAATTTAGAAAAAAAGTACTTTTTGGCGATTTTACAAGTTTATAGCGATACGCAAATTAAATATCAT
TACAAAAAAAGCATAGAGCACTTTATAGAGGAAACCATACTTTCTTTTGCAAACCATGCAAGAGCTAAATCTTATCTAGT
TTTTAAACACCATCCCATGGATAGGGGCTATAAGAATTATTCTAAACTCATAAATGATTTAAGTCAAAAATATCATGTAG
AAGGAAGGGTTTTATATGTTCATGATACCCACTTGCCAGTTCTTTTAAGAAAGGCTTTGGGTTGTATTACTATAAATTCA
ACAGTAGGCCTTAGTGCTATTTTAGAAGGCTGTCCGACTAAGGTTTGTGGCAATGCTTTTTATGATTTTGAAGGCTTATC
TTATCCAAAAAAACTTCAATTTTTTTGGCGTGAAGCTCATGCTTATAAACCCAATCCTGTTTTGGTATGTAATTTTAAAA
AATATCTTTTACAAACTAATCAATTCAACGGCAATTTTTATAAAAATTTCTTTTTAGACAAATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

97.97

100

0.98


Multiple sequence alignment