Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   HHJ22_RS19285 Genome accession   NZ_CP053284
Coordinates   3959356..3959871 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain SCU-104     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3954356..3964871
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHJ22_RS19260 (HHJ22_19260) ygaZ 3954755..3955492 (+) 738 WP_000445651.1 L-valine exporter subunit YgaZ -
  HHJ22_RS19265 (HHJ22_19265) ygaH 3955482..3955817 (+) 336 WP_000119763.1 L-valine transporter subunit YgaH -
  HHJ22_RS19270 (HHJ22_19275) emrR 3955908..3956438 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  HHJ22_RS19275 (HHJ22_19280) emrA 3956565..3957737 (+) 1173 WP_001326681.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  HHJ22_RS19280 (HHJ22_19285) emrB 3957754..3959292 (+) 1539 WP_016232280.1 multidrug efflux MFS transporter permease subunit EmrB -
  HHJ22_RS19285 (HHJ22_19290) luxS 3959356..3959871 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  HHJ22_RS19290 (HHJ22_19295) gshA 3960021..3961577 (-) 1557 WP_168725903.1 glutamate--cysteine ligase -
  HHJ22_RS19295 (HHJ22_19300) yqaA 3961650..3962078 (-) 429 WP_001287454.1 YqaA family protein -
  HHJ22_RS19300 (HHJ22_19305) yqaB 3962075..3962641 (-) 567 WP_000273290.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  HHJ22_RS19330 (HHJ22_19335) csrA 3964099..3964284 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=391471 HHJ22_RS19285 WP_001130211.1 3959356..3959871(-) (luxS) [Escherichia coli strain SCU-104]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=391471 HHJ22_RS19285 WP_001130211.1 3959356..3959871(-) (luxS) [Escherichia coli strain SCU-104]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731