Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   HHJ22_RS15370 Genome accession   NZ_CP053284
Coordinates   3143165..3144592 (+) Length   475 a.a.
NCBI ID   WP_074511707.1    Uniprot ID   -
Organism   Escherichia coli strain SCU-104     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3138165..3149592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHJ22_RS15330 (HHJ22_15320) yeeW 3138349..3138543 (+) 195 WP_000988600.1 DUF5983 family protein -
  HHJ22_RS15335 (HHJ22_15325) - 3138589..3138669 (+) 81 Protein_3043 hypothetical protein -
  HHJ22_RS26040 (HHJ22_15330) - 3138958..3139131 (-) 174 WP_032082634.1 transposase domain-containing protein -
  HHJ22_RS15345 (HHJ22_15335) - 3139158..3139340 (+) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  HHJ22_RS15350 (HHJ22_15340) tmaR 3139441..3139770 (-) 330 WP_000450409.1 DUF496 family protein -
  HHJ22_RS15355 (HHJ22_15345) yeeA 3139942..3141000 (-) 1059 WP_174147737.1 FUSC family protein -
  HHJ22_RS15360 (HHJ22_15350) sbmC 3141198..3141671 (-) 474 WP_001105412.1 DNA gyrase inhibitor SbmC -
  HHJ22_RS15365 (HHJ22_15355) dacD 3141790..3142956 (-) 1167 WP_000830173.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  HHJ22_RS15370 (HHJ22_15360) sbcB 3143165..3144592 (+) 1428 WP_074511707.1 exodeoxyribonuclease I Machinery gene
  HHJ22_RS15375 (HHJ22_15365) tsuB 3144635..3144862 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  HHJ22_RS15380 (HHJ22_15370) tsuA 3144876..3145934 (-) 1059 WP_174147738.1 thiosulfate utilization transporter TsuA/YeeE -
  HHJ22_RS15385 (HHJ22_15375) plaP 3146113..3147471 (-) 1359 WP_024198437.1 putrescine/proton symporter PlaP -
  HHJ22_RS15390 (HHJ22_15380) yoeI 3147461..3147523 (-) 63 WP_010723108.1 membrane protein YoeI -
  HHJ22_RS15395 (HHJ22_15385) yeeY 3147738..3148667 (-) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  HHJ22_RS15400 (HHJ22_15390) yeeZ 3148713..3149537 (-) 825 WP_000754737.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54424.72 Da        Isoelectric Point: 5.4700

>NTDB_id=391460 HHJ22_RS15370 WP_074511707.1 3143165..3144592(+) (sbcB) [Escherichia coli strain SCU-104]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMLGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=391460 HHJ22_RS15370 WP_074511707.1 3143165..3144592(+) (sbcB) [Escherichia coli strain SCU-104]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CGGATGACTATTTACCCCAGCCTGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTACTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTAGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCAGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTAAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGCGCAGCAATGAAAATTGTGCTGGAAACCGAGCCACGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGAATTGAAAAACTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTGCAGGGCTATGCTGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

59.149

98.947

0.585