Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   LM596_RS03530 Genome accession   NZ_CP045035
Coordinates   761200..763011 (+) Length   603 a.a.
NCBI ID   WP_003688059.1    Uniprot ID   J1F4Q8
Organism   Liquorilactobacillus mali strain LM596     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 756200..768011
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LM596_RS03500 (LM596_03500) - 756350..756907 (-) 558 WP_003688070.1 M15 family metallopeptidase -
  LM596_RS03505 (LM596_03505) - 756958..757419 (-) 462 WP_003688068.1 hypothetical protein -
  LM596_RS03510 (LM596_03510) - 757483..758223 (+) 741 WP_003688066.1 MBL fold metallo-hydrolase -
  LM596_RS03515 (LM596_03515) spxA 758589..758987 (+) 399 WP_003688064.1 transcriptional regulator SpxA -
  LM596_RS03520 (LM596_03520) - 759229..760041 (+) 813 WP_003688062.1 adaptor protein MecA -
  LM596_RS03525 (LM596_03525) - 760100..761107 (+) 1008 WP_003688060.1 competence protein CoiA -
  LM596_RS03530 (LM596_03530) pepF 761200..763011 (+) 1812 WP_003688059.1 oligoendopeptidase F Regulator
  LM596_RS03535 (LM596_03535) - 763167..763790 (-) 624 WP_235720325.1 DsbA family protein -
  LM596_RS03540 (LM596_03540) - 764004..764636 (+) 633 WP_003688056.1 GTP pyrophosphokinase -
  LM596_RS03545 (LM596_03545) - 764731..765537 (+) 807 WP_003688054.1 NAD kinase -
  LM596_RS03550 (LM596_03550) - 765527..766429 (+) 903 WP_003688053.1 RluA family pseudouridine synthase -
  LM596_RS03555 (LM596_03555) mgtE 766436..767803 (+) 1368 WP_003688052.1 magnesium transporter -

Sequence

Protein


Download         Length: 603 a.a.        Molecular weight: 69004.51 Da        Isoelectric Point: 5.4118

>NTDB_id=391404 LM596_RS03530 WP_003688059.1 761200..763011(+) (pepF) [Liquorilactobacillus mali strain LM596]
MSKEISKLKSRSEVPEELKWDLTKVYQNENELAEDIKGIQEEIKRADKLKNTLKDGSLALKEALKTYFTVERKTVKVYVY
TSMLSDQDTNNKKNQGLFSQAQQLYAKVAAAFSWFEPELLALGEKKLNEYYDNDQELTGYKQYISEIMAKKDHLLSEKEE
KLLAGASDIFSTPENIFGILNNADLKFPTVTDEKGNKVELSHGLYGKFLESGNRRVRKEAFQGLYKTYGQFENTFATSLA
AHVHTHNFQASVRNYPDAVSAALSTNNIPVAVYDTLVERVNNHLDLLHRYVEVRKEVLNLDSVHMYDLYAPITKLPEEKY
NYKNSKKIALDALSIFGEDYVQTVKNAFASRWIDVLENTGKRSGAYSSGMFDTPPYILLNWQDNLESLFTLVHEMGHSMH
SYLSNHNQPYHYSDYSIFVAEIASTTNENILTQYLLDNSDDLQFKAYVLNHYLDGFKGTVYRQTQFAEFERWLHDQDKAG
LPLTSQELNNKYANLNEHYYGPAITNDPEIALEWSRIPHFYYNFYVYQYATGFAAASALAGKIVKEGPASYLEFLKSGSS
ALPIDIVKQAGVDMTKPNYLDDAFVVFEQRLGELEDVLAKLQN

Nucleotide


Download         Length: 1812 bp        

>NTDB_id=391404 LM596_RS03530 WP_003688059.1 761200..763011(+) (pepF) [Liquorilactobacillus mali strain LM596]
ATGTCAAAAGAGATTTCCAAATTAAAAAGTAGAAGTGAAGTACCTGAGGAATTAAAGTGGGATTTAACAAAGGTATACCA
AAACGAAAATGAACTAGCTGAAGATATTAAAGGGATACAAGAAGAAATCAAGAGAGCAGATAAACTAAAAAATACTCTCA
AAGATGGGAGTTTGGCTCTTAAAGAAGCATTAAAGACTTATTTTACAGTTGAAAGAAAGACAGTTAAGGTATACGTTTAT
ACGAGTATGCTGAGTGATCAGGATACGAATAATAAAAAAAATCAGGGCTTGTTTTCGCAAGCACAACAACTTTATGCTAA
AGTTGCTGCAGCTTTTTCATGGTTTGAACCAGAACTATTGGCGTTAGGCGAGAAAAAATTGAATGAGTATTACGATAATG
ATCAAGAATTGACAGGATACAAGCAGTATATAAGCGAAATCATGGCAAAGAAAGATCATTTATTATCAGAAAAAGAAGAG
AAGCTTCTTGCAGGAGCGTCTGATATTTTTTCTACACCGGAAAATATTTTTGGAATATTGAATAATGCTGATCTTAAATT
TCCAACTGTAACAGATGAAAAGGGAAATAAGGTTGAGTTGTCGCATGGATTGTACGGAAAATTTTTGGAGTCTGGAAATC
GTAGAGTTAGAAAAGAAGCATTTCAAGGGTTGTACAAGACATATGGACAATTTGAAAATACATTTGCAACTTCGCTTGCA
GCGCATGTACATACGCATAATTTTCAAGCGAGTGTCAGAAACTATCCAGATGCAGTTTCGGCTGCATTAAGTACTAATAA
TATTCCTGTTGCTGTTTACGATACATTAGTTGAACGAGTGAACAATCATCTAGATTTGTTGCATCGCTACGTAGAAGTGC
GAAAAGAGGTATTAAATTTGGATTCGGTACATATGTACGATTTATATGCACCAATTACAAAATTACCTGAGGAAAAATAT
AATTATAAAAATTCAAAAAAGATAGCGCTGGATGCACTAAGTATATTTGGGGAAGATTATGTTCAGACGGTTAAAAATGC
ATTTGCAAGTCGTTGGATAGATGTTCTTGAAAATACTGGTAAGCGCAGCGGAGCGTACTCATCGGGAATGTTTGATACGC
CACCGTATATTTTACTTAATTGGCAGGATAACTTGGAGAGTCTTTTCACGTTAGTACATGAGATGGGTCACAGTATGCAT
TCATATTTGAGCAATCATAATCAACCGTATCACTACAGTGACTACTCAATTTTTGTTGCTGAGATCGCATCAACAACTAA
TGAGAATATTTTGACACAATACTTACTAGATAATAGTGATGACTTGCAATTTAAAGCTTATGTATTGAATCACTACTTGG
ATGGATTCAAGGGAACAGTGTATCGTCAAACGCAATTTGCAGAATTTGAGAGATGGCTTCATGATCAGGACAAGGCCGGG
TTACCGTTGACTTCACAAGAACTCAATAATAAATATGCTAACTTAAATGAGCATTATTATGGGCCTGCAATCACTAATGA
TCCAGAAATTGCTTTGGAGTGGTCGAGAATTCCTCATTTCTATTACAACTTTTATGTATACCAGTATGCTACAGGATTTG
CAGCTGCAAGTGCCTTAGCAGGCAAGATTGTAAAAGAAGGGCCTGCAAGCTATCTTGAATTCTTAAAATCAGGTAGCTCT
GCATTACCGATTGATATTGTTAAACAAGCGGGCGTTGATATGACAAAACCTAATTATTTAGATGATGCTTTTGTGGTTTT
TGAGCAACGTTTGGGAGAGCTTGAAGATGTTCTGGCAAAATTACAGAATTAG

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(118-187)

Peptidase family M3 (Peptidase_M3)

(209-584)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB J1F4Q8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

49.495

98.507

0.488

Multiple sequence alignment