Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   HHJ45_RS09250 Genome accession   NZ_CP053281
Coordinates   1909172..1910599 (-) Length   475 a.a.
NCBI ID   WP_000980600.1    Uniprot ID   -
Organism   Escherichia coli strain SCU-308     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1904172..1915599
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HHJ45_RS09220 (HHJ45_09215) yeeZ 1904230..1905054 (+) 825 WP_000754737.1 SDR family oxidoreductase -
  HHJ45_RS09225 (HHJ45_09220) yeeY 1905100..1906029 (+) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  HHJ45_RS09230 (HHJ45_09225) yoeI 1906244..1906306 (+) 63 WP_010723108.1 membrane protein YoeI -
  HHJ45_RS09235 (HHJ45_09230) plaP 1906296..1907654 (+) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  HHJ45_RS09240 (HHJ45_09235) tsuA 1907831..1908888 (+) 1058 Protein_1828 thiosulfate utilization transporter TsuA/YeeE -
  HHJ45_RS09245 (HHJ45_09240) tsuB 1908902..1909129 (+) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  HHJ45_RS09250 (HHJ45_09245) sbcB 1909172..1910599 (-) 1428 WP_000980600.1 exodeoxyribonuclease I Machinery gene
  HHJ45_RS09255 (HHJ45_09250) dacD 1910808..1911974 (+) 1167 WP_000830156.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  HHJ45_RS09260 (HHJ45_09255) sbmC 1912093..1912566 (+) 474 WP_001105415.1 DNA gyrase inhibitor SbmC -
  HHJ45_RS09265 (HHJ45_09260) yeeA 1912764..1913822 (+) 1059 WP_029364112.1 FUSC family protein -
  HHJ45_RS09270 (HHJ45_09265) tmaR 1913994..1914323 (+) 330 WP_000450409.1 DUF496 family protein -
  HHJ45_RS26170 (HHJ45_09270) - 1914424..1914606 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  HHJ45_RS25640 - 1914726..1914806 (+) 81 WP_023441679.1 hypothetical protein -
  HHJ45_RS09285 (HHJ45_09280) - 1915095..1915175 (-) 81 Protein_1837 hypothetical protein -
  HHJ45_RS09290 (HHJ45_09285) yeeW 1915221..1915415 (-) 195 WP_000988600.1 DUF5983 family protein -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54416.65 Da        Isoelectric Point: 5.2420

>NTDB_id=391364 HHJ45_RS09250 WP_000980600.1 1909172..1910599(-) (sbcB) [Escherichia coli strain SCU-308]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREEVVAIFAEAEPFTPSDNVDAQLYSGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAEEIQMLAQQYADDKEKVALLKALWQYAEEIV

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=391364 HHJ45_RS09250 WP_000980600.1 1909172..1910599(-) (sbcB) [Escherichia coli strain SCU-308]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGAATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGTCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCAGAAAATCGCAATGCCGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACTGCAAAAGCCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGTGAAGAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAGTGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTTGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTTGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCACGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAAGGCTATGCAGAAGAGATTCAGATGCTGGCGCAGCAGT
ATGCCGACGATAAAGAAAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATTGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(212-472)

Exonuclease (RNase_T)

(13-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.511

98.947

0.579