Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   F9800_RS26605 Genome accession   NZ_CP045030
Coordinates   4021571..4022029 (+) Length   152 a.a.
NCBI ID   WP_000804864.1    Uniprot ID   -
Organism   Bacillus thuringiensis strain JW-1     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 4016571..4027029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F9800_RS26590 (F9800_26625) - 4017241..4017477 (+) 237 WP_000283738.1 hypothetical protein -
  F9800_RS26595 (F9800_26630) - 4017638..4019746 (-) 2109 WP_000423553.1 polyphosphate kinase -
  F9800_RS26600 (F9800_26635) - 4019855..4021429 (-) 1575 WP_003256889.1 Ppx/GppA family phosphatase -
  F9800_RS26605 (F9800_26640) kre 4021571..4022029 (+) 459 WP_000804864.1 YkyB family protein Regulator
  F9800_RS26610 (F9800_26645) - 4022061..4022723 (-) 663 WP_003256886.1 YkyA family protein -
  F9800_RS26615 (F9800_26650) - 4023338..4023991 (-) 654 WP_000680815.1 diguanylate cyclase domain-containing protein -
  F9800_RS26620 (F9800_26655) - 4024155..4024388 (+) 234 WP_000939448.1 SPP1 phage holin family protein -
  F9800_RS26625 (F9800_26660) - 4024421..4024921 (-) 501 WP_000708116.1 hypothetical protein -
  F9800_RS26630 (F9800_26665) - 4025325..4026866 (+) 1542 WP_000449901.1 MDR family MFS transporter -

Sequence

Protein


Download         Length: 152 a.a.        Molecular weight: 17757.49 Da        Isoelectric Point: 10.6793

>NTDB_id=391329 F9800_RS26605 WP_000804864.1 4021571..4022029(+) (kre) [Bacillus thuringiensis strain JW-1]
MKPSQPQSQLQNQHSINRLAQSIFVVNRHAKAATNPKYLYWLKKTALERLIAEKKAIKEGLHFSRNPRFSQQQSDVLIRL
GDYFFHIPPTKEDFRILPHLGHLESSYRNPKTTLSLTVAKKTLQDYIGPEALKQEKKLSEPVPWYSRTYTKK

Nucleotide


Download         Length: 459 bp        

>NTDB_id=391329 F9800_RS26605 WP_000804864.1 4021571..4022029(+) (kre) [Bacillus thuringiensis strain JW-1]
ATGAAACCTTCACAACCACAATCTCAATTACAAAACCAACATTCTATTAATCGACTAGCTCAATCTATTTTCGTTGTGAA
TCGTCATGCTAAAGCAGCTACTAATCCTAAATATTTATACTGGTTAAAAAAGACAGCTTTAGAGCGTTTGATTGCTGAAA
AAAAAGCAATTAAAGAAGGATTACATTTTTCTAGAAACCCACGTTTTAGCCAACAACAATCTGATGTCCTTATACGTTTA
GGCGATTATTTTTTCCACATCCCTCCTACGAAAGAAGATTTTCGAATTCTACCGCATCTTGGTCATCTTGAATCCTCCTA
TCGAAATCCGAAAACAACCTTATCTTTAACAGTAGCAAAAAAAACACTTCAAGATTATATTGGGCCTGAAGCATTGAAAC
AAGAAAAAAAATTAAGTGAACCGGTTCCATGGTATAGTCGTACTTATACAAAAAAATAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(16-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

64.655

76.316

0.493

Multiple sequence alignment