Detailed information    

insolico Bioinformatically predicted

Overview

Name   cytR   Type   Regulator
Locus tag   HLY12_RS21845 Genome accession   NZ_CP053259
Coordinates   4645579..4646571 (-) Length   330 a.a.
NCBI ID   WP_000224466.1    Uniprot ID   -
Organism   Escherichia coli strain GF3-3     
Function   promote competence gene expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4640579..4651571
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HLY12_RS21835 (HLY12_21845) yieP 4643471..4644163 (+) 693 WP_046122667.1 FadR/GntR family transcriptional regulator -
  HLY12_RS21840 (HLY12_21850) mdtD 4644186..4645613 (+) 1428 WP_171284543.1 multidrug transporter subunit MdtD -
  HLY12_RS21845 (HLY12_21855) cytR 4645579..4646571 (-) 993 WP_000224466.1 ribose operon transcriptional repressor RbsR Regulator
  HLY12_RS21850 (HLY12_21860) rbsK 4646575..4647504 (-) 930 WP_001300603.1 ribokinase -
  HLY12_RS21855 (HLY12_21865) rbsB 4647630..4648520 (-) 891 WP_001056273.1 ribose ABC transporter substrate-binding protein RbsB -
  HLY12_RS21860 (HLY12_21870) rbsC 4648545..4649510 (-) 966 WP_000211858.1 ribose ABC transporter permease -
  HLY12_RS21865 (HLY12_21875) rbsA 4649515..4651020 (-) 1506 WP_000387770.1 ribose ABC transporter ATP-binding protein RbsA -
  HLY12_RS21870 (HLY12_21880) rbsD 4651028..4651447 (-) 420 WP_000715936.1 D-ribose pyranase -

Sequence

Protein


Download         Length: 330 a.a.        Molecular weight: 36623.96 Da        Isoelectric Point: 5.2141

>NTDB_id=391328 HLY12_RS21845 WP_000224466.1 4645579..4646571(-) (cytR) [Escherichia coli strain GF3-3]
MATMKDVARLAGVSTSTVSHVINKDRFVSEAITAKVEAAIKELNYAPSALARSLKLNQTHTIGMLITASTNPFYSELVRG
VERSCFERGYSLVLCNTEGDEQRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPTVPTVMMDWAPFDGDSDLIQDN
SLLGGDLATQYLIDKGHTRIACITGPLDKTPARLRLEGYRAAMKRAGLNIPDGYEVTGDFEFNGGFDAMRQLLSHPLRPQ
AVFTGNDAMAVGVYQALYQAELQVPQDIAVIGYDDIELASFMTPPLTTIHQPKDELGELAIDVLIHRIIQPTLQQQRLQL
TPILMERGSA

Nucleotide


Download         Length: 993 bp        

>NTDB_id=391328 HLY12_RS21845 WP_000224466.1 4645579..4646571(-) (cytR) [Escherichia coli strain GF3-3]
TTGGCTACAATGAAAGATGTTGCCCGCCTGGCGGGCGTTTCTACCTCAACAGTTTCTCACGTTATCAATAAAGATCGCTT
CGTCAGTGAAGCGATTACCGCCAAAGTTGAAGCGGCGATTAAAGAACTCAATTACGCGCCATCAGCTCTGGCGCGTAGCC
TCAAACTCAATCAAACACATACCATTGGCATGTTGATTACTGCCAGTACCAATCCTTTCTATTCAGAACTGGTGCGTGGC
GTTGAACGCAGCTGCTTCGAACGCGGTTATAGTCTCGTTCTTTGCAATACCGAAGGCGATGAACAACGGATGAATCGCAA
TCTGGAAACGCTGATGCAAAAACGCGTTGATGGCTTGCTATTACTGTGCACCGAAACGCATCAGCCTTCGCGTGAAATCA
TGCAACGTTATCCGACAGTGCCTACCGTGATGATGGACTGGGCTCCGTTCGATGGAGACAGCGATCTTATTCAGGATAAC
TCGTTGCTGGGCGGAGACTTAGCAACGCAATATCTGATCGATAAAGGTCATACCCGTATCGCCTGTATTACCGGTCCGCT
GGATAAAACTCCGGCGCGCCTGCGGTTGGAAGGTTATCGGGCAGCGATGAAACGTGCGGGTCTCAACATTCCTGATGGCT
ATGAAGTCACTGGTGATTTTGAATTTAACGGCGGGTTTGACGCCATGCGCCAACTGCTATCACATCCGCTGCGTCCTCAG
GCCGTCTTTACCGGAAATGACGCTATGGCTGTTGGCGTTTACCAGGCGTTATATCAGGCAGAGTTACAGGTTCCGCAGGA
TATCGCGGTGATTGGCTATGACGATATCGAACTGGCAAGCTTTATGACGCCACCATTAACCACTATCCATCAACCAAAAG
ATGAACTGGGGGAGCTGGCGATTGATGTACTCATCCATCGGATAATCCAGCCGACCCTTCAGCAACAACGATTACAACTT
ACTCCGATTCTGATGGAACGTGGTTCGGCTTAG

Domains

Predicted by InterProScan.

Periplasmic binding protein-like domain (Peripla_BP_3)

(169-329)

Bacterial regulatory proteins, lacI family (LacI)

(3-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cytR Vibrio parahaemolyticus RIMD 2210633

37.048

100

0.373
  cytR Vibrio cholerae C6706

39.088

93.03

0.364

Multiple sequence alignment