Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   F9800_RS17940 Genome accession   NZ_CP045030
Coordinates   2319793..2320071 (+) Length   92 a.a.
NCBI ID   WP_000842214.1    Uniprot ID   A0A9W5VLT2
Organism   Bacillus thuringiensis strain JW-1     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 2314793..2325071
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F9800_RS17920 (F9800_17950) - 2316563..2317372 (+) 810 WP_000678376.1 papain-like cysteine protease family protein -
  F9800_RS17925 (F9800_17955) - 2317398..2318003 (+) 606 WP_000527414.1 hypothetical protein -
  F9800_RS17930 (F9800_17960) - 2318144..2318395 (-) 252 WP_000821942.1 response regulator transcription factor -
  F9800_RS17935 (F9800_17965) - 2318773..2319652 (+) 880 Protein_2297 helix-turn-helix domain-containing protein -
  F9800_RS17940 (F9800_17970) abrB 2319793..2320071 (+) 279 WP_000842214.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  F9800_RS17945 (F9800_17975) - 2320683..2321933 (+) 1251 WP_001032355.1 hypothetical protein -
  F9800_RS17950 (F9800_17980) - 2322001..2322759 (+) 759 WP_000347992.1 TSUP family transporter -
  F9800_RS17955 (F9800_17985) - 2323012..2323671 (+) 660 WP_000682536.1 CatB-related O-acetyltransferase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10363.20 Da        Isoelectric Point: 9.6547

>NTDB_id=391323 F9800_RS17940 WP_000842214.1 2319793..2320071(+) (abrB) [Bacillus thuringiensis strain JW-1]
MKSRGITRKADSMGRIVIPMEIRRSLGIVEKDSLEMFIEEDQIILRKYQSPRACALTGDISDSNISLANGKIIVSPEGTE
LLIKKLQQYLLK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=391323 F9800_RS17940 WP_000842214.1 2319793..2320071(+) (abrB) [Bacillus thuringiensis strain JW-1]
ATGAAATCAAGAGGGATTACTCGTAAAGCAGATAGCATGGGGCGTATTGTTATTCCAATGGAAATAAGACGGAGTTTAGG
AATTGTAGAAAAAGATTCTCTTGAAATGTTTATAGAAGAGGATCAGATTATTTTACGAAAATATCAATCTCCAAGAGCTT
GTGCACTTACAGGTGATATTTCAGACAGCAATATTTCGTTAGCGAATGGGAAGATTATTGTAAGTCCAGAGGGGACGGAA
CTATTAATAAAGAAGTTACAGCAATATCTTTTAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(9-52)

AbrB C-terminal domain (AbrB_C)

(53-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

51.111

97.826

0.5

Multiple sequence alignment