Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   HLY12_RS16155 Genome accession   NZ_CP053259
Coordinates   3432289..3432894 (-) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain GF3-3     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3427289..3437894
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HLY12_RS16135 (HLY12_16145) aes 3427430..3428389 (+) 960 WP_000801812.1 acetyl esterase -
  HLY12_RS16140 (HLY12_16150) hemH 3428386..3429348 (-) 963 WP_089564469.1 ferrochelatase -
  HLY12_RS16145 (HLY12_16155) adk 3429480..3430124 (-) 645 WP_001220233.1 adenylate kinase -
  HLY12_RS16150 (HLY12_16160) htpG 3430305..3432179 (-) 1875 WP_171284397.1 molecular chaperone HtpG -
  HLY12_RS16155 (HLY12_16165) recR 3432289..3432894 (-) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  HLY12_RS16160 (HLY12_16170) ybaB 3432894..3433223 (-) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  HLY12_RS16165 (HLY12_16175) dnaX 3433276..3435207 (-) 1932 WP_171284398.1 DNA polymerase III subunit gamma/tau -
  HLY12_RS16170 (HLY12_16180) apt 3435336..3435887 (-) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  HLY12_RS16175 (HLY12_16185) ybaN 3436040..3436417 (-) 378 WP_001188905.1 DUF454 family protein -
  HLY12_RS16180 (HLY12_16190) priC 3436487..3437014 (+) 528 WP_171284399.1 primosomal replication protein N'' -
  HLY12_RS16185 (HLY12_16195) rsmS 3437028..3437189 (+) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  HLY12_RS22505 - 3437242..3437340 (-) 99 Protein_3209 hypothetical protein -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=391304 HLY12_RS16155 WP_001195025.1 3432289..3432894(-) (recR) [Escherichia coli strain GF3-3]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=391304 HLY12_RS16155 WP_001195025.1 3432289..3432894(-) (recR) [Escherichia coli strain GF3-3]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACCTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATTTACGCCATTGAGCAGACGGGGCAGTTTTCAGGTCGTTATTTTGT
GTTGATGGGACATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment