Detailed information NTG0039122

Bioinformatically predicted

Overview

• Name: pilM
• Type: Machinery gene
• Locus tag: OCEPR_RS07010
• Genome accession: NC_014761
• Coordinates: 1420129..1421274 (+)
• Length: 381 a.a.
• NCBI ID: WP_013458014.1
• Uniprot ID: -
• Organism: Oceanithermus profundus DSM 14977
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1415129..1426274

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
OCEPR_RS06990 (Ocepr_1383)	-	1415507..1416493 (-)	987	WP_013458009.1	hypothetical protein	-
OCEPR_RS13160	-	1417061..1417237 (-)	177	WP_245544451.1	hypothetical protein	-
OCEPR_RS13200 (Ocepr_1385)	-	1417213..1418496 (+)	1284	WP_342626188.1	HD-GYP domain-containing protein	-
OCEPR_RS07000 (Ocepr_1386)	-	1418382..1418966 (+)	585	WP_148229278.1	DUF5317 domain-containing protein	-
OCEPR_RS07005 (Ocepr_1387)	-	1418998..1420023 (+)	1026	WP_013458013.1	isocitrate/isopropylmalate dehydrogenase family protein	-
OCEPR_RS07010 (Ocepr_1388)	pilM	1420129..1421274 (+)	1146	WP_013458014.1	type IV pilus assembly protein PilM	Machinery gene
OCEPR_RS07015 (Ocepr_1389)	pilN	1421267..1421908 (+)	642	WP_013458015.1	flagellar protein FliT	Machinery gene
OCEPR_RS07020 (Ocepr_1390)	pilO	1421898..1422488 (+)	591	WP_013458016.1	type 4a pilus biogenesis protein PilO	-
OCEPR_RS07025 (Ocepr_1391)	-	1422485..1423342 (+)	858	WP_013458017.1	hypothetical protein	-
OCEPR_RS07030 (Ocepr_1392)	-	1423345..1424895 (+)	1551	WP_041554095.1	secretin N-terminal domain-containing protein	-
OCEPR_RS07035 (Ocepr_1393)	aroC	1424961..1426118 (+)	1158	WP_013458019.1	chorismate synthase	-

Sequence

Protein

• Length: 381 a.a.
• Molecular weight: 41925.69 Da
• Isoelectric Point: 4.3652

>NTDB_id=39122 OCEPR_RS07010 WP_013458014.1 1420129..1421274(+) (pilM) [Oceanithermus profundus DSM 14977]
MRNLLNRWLQPRIEALGLEIGAGNLKLVEISGSPPTLKGYAIRPTPHGAIHGGNIVEPSAIAAELREMMAEMQTRKRYVV
AGVSNLAVITRIIQVPKMGERELEEAIHWEAERYIPFPIDEVVLDFAPLDPPSEVPDDSQLDVVIAAARLETITQLVETL
KEANLEPVVLDVKPFAGLRTVEDYLNGGGNEGNEPITVFLEVGAESSSLVLTRGNRLLMNRNLNISGNDFTEAISKSFGL
DFSSAEEVKRDFGLATIPTEDEESLLDFDAERERFNPARMYDAIRPVLVDFTTELRRSLEFFRVQVGDIHIDKGYISGGG
SKLRGLPGILGEALGLQLDPVNPWAALQINESQFDVSDLHRLSPEFTVPVGLGLRGVDPLD

Nucleotide

• Length: 1146 bp

>NTDB_id=39122 OCEPR_RS07010 WP_013458014.1 1420129..1421274(+) (pilM) [Oceanithermus profundus DSM 14977]
GTGCGAAATCTATTAAACCGATGGTTGCAACCGCGTATCGAGGCGTTGGGTCTCGAAATAGGTGCGGGCAACCTGAAACT
CGTCGAGATCAGCGGGTCACCCCCGACGCTGAAGGGTTACGCGATCCGCCCGACGCCGCACGGCGCGATCCACGGCGGCA
ACATCGTAGAACCCAGTGCGATCGCGGCCGAGCTGCGCGAGATGATGGCCGAAATGCAGACCCGCAAGCGCTACGTGGTG
GCCGGGGTGTCGAACCTGGCGGTCATCACCCGCATCATCCAGGTGCCCAAGATGGGCGAGCGCGAGCTCGAAGAGGCCAT
CCACTGGGAAGCCGAGCGGTACATCCCCTTCCCCATCGACGAAGTCGTGCTGGACTTCGCACCCTTGGATCCCCCCTCCG
AGGTTCCCGACGACAGCCAGCTCGACGTCGTCATCGCCGCGGCCCGGCTCGAGACCATCACCCAGCTCGTCGAGACGCTG
AAGGAGGCCAACCTCGAGCCCGTGGTCCTCGACGTGAAACCCTTCGCGGGGCTGCGCACCGTGGAGGACTACCTCAACGG
CGGCGGCAACGAGGGCAACGAGCCCATCACGGTCTTCCTCGAGGTGGGCGCCGAGTCCTCCTCGCTGGTCCTTACGCGCG
GCAACCGCCTGCTCATGAACCGCAACCTCAACATCTCGGGCAACGACTTCACCGAGGCCATCTCCAAATCCTTCGGCCTC
GATTTTTCGAGCGCCGAGGAGGTCAAGCGCGACTTCGGTCTGGCCACGATCCCCACGGAGGACGAGGAGTCGCTGCTCGA
CTTCGACGCCGAGCGCGAGCGCTTCAACCCCGCCCGGATGTACGACGCCATCCGCCCGGTCCTGGTCGACTTCACTACGG
AGCTGCGCCGCAGCCTCGAGTTCTTCCGGGTCCAGGTGGGCGACATCCACATCGACAAGGGCTACATCTCCGGCGGCGGC
AGCAAGCTGCGCGGCCTCCCGGGCATCCTCGGCGAAGCGCTGGGGTTGCAGCTCGACCCGGTGAACCCCTGGGCCGCGCT
CCAGATCAACGAGTCGCAGTTCGACGTTTCGGACCTGCACCGGCTGTCCCCGGAGTTCACGGTGCCCGTGGGTCTGGGCC
TGAGGGGGGTGGATCCGCTTGATTAG

Domains

Predicted by InterproScan.

• Type IV pilus assembly protein PilM; (PilM_2) (282-376)

• Type IV pilus assembly protein PilM; (PilM_2) (17-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilM	Thermus thermophilus HB27	58.747	100	0.591